Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00028 ATGTCGTTTAGGAGCATCATTCTGGATAGGAAGGGATTTGAGGTGAAGTTTGGGTATGGTTTGAGATCAAGGTCACATTCACACAGTGATGTTATTGCTCAGGATAGTTCATTGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCAGAGCTTTTGAGGGATGTCCTCATGAGGATTGAGGCCTCTGAAGATACATGGCCTGCCCGGAAACACGTCGTTGCCTGTGCTGGTGTTTGCCGTAGTTGGAGAGAAATCATGAAGGAAATTGTCAAACCTCCTCAATTATCCAGCAAGTTGACATTTCCTATCTCCGTGAAGCAGCCTGGTCCAAGGGACTCTCTTATTCAGTGCTATATTAAACGAAATCGCAGTAGTCAAACATATCATCTGTTTCTTGGTTTAAACCAAGCCTCGACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGACATGCAACCCACACAGACTATATCATCTCTCTTAACTATGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGTACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCACCAATACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCAATCCCATTCTTCAGATCAAAGTCAACCCGCATGGAGAATCATGAATCAATGCCTTTGACTTGTCAAAATGAGGGGACACTGGTATTGCGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGACGAGTGACAGTAGCTTCAGTTAAAAATTTCCAGCTGGTTGCATCTCCTAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTTCAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1089 0.4417 MSFRSIILDRKGFEVKFGYGLRSRSHSHSDVIAQDSSLVLDGLKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKPPQLSSKLTFPISVKQPGPRDSLIQCYIKRNRSSQTYHLFLGLNQASTDDGKFLLAARKCRHATHTDYIISLNYDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKGGPRIMQCVMDAIPASAVEPGGVAPIQTQFLHSRIDTSPSIPFFRSKSTRMENHESMPLTCQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00028 362 CDD F-box_AtTLP-like 48 92 - -
Sebi28g00028 362 PANTHER TUBBY-RELATED 32 360 - -
Sebi28g00028 362 Pfam Tub family 206 357 IPR000007 -
Sebi28g00028 362 Pfam Tub family 109 204 IPR000007 -
Sebi28g00028 362 ProSitePatterns Tub family signature 2. 347 362 IPR018066 -
Sebi28g00028 362 Pfam F-box domain 48 94 IPR001810 GO:0005515
Sebi28g00028 362 SUPERFAMILY Tubby C-terminal domain-like 97 362 IPR025659 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 340 362 IPR000007 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 274 291 IPR000007 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 319 338 IPR000007 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Sebi28g00028 362 PRINTS Tubby superfamily signature 292 308 IPR000007 -
Sebi28g00028 362 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Sebi28g00028 362 Gene3D Tubby Protein; Chain A 105 362 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00028 Sebi-Chr28 475338 478277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00028 1 362 TUB Transcription Factor Family AT2G47900 66.505 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi28g00028 Tub 1.9e-55 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00028 K19600 - gmx:100809257 668.307