Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00018 ATGTCAAATGTTTCAGGTGATGAAGTTAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATCAAGAAAAGGAGCAGCAACAACCACAAAATCACCCTCATGGCTCAAGTTCAGGACCTTCTGGTGCTTCCAACAGCAATAGCTCCTCTAATCAACAACAACAAGAAGCAACCAAGAAGAAAAGAAGTCTACCTGGAACCCCAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAATAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGGAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACAACCAATGAGGTGAAGAAAAGGGTGTATGTGTGTCCTGAGCCATCATGCGTTCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACATTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAATGCTCTAAAAAATATGCAGTCCAATCTGATTGGAAGGCTCACCAGAAAACATGTGGTACCAAAGAATACAAATGTGATTGCGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCATAGAGCATTTTGTGACGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGACATCAAACATGCAAAATGAAGTGCAGGATCCTATGGCTACAATGCCACTAAGCACTAGTACACTTTTTGGTGGTCCAAGAAGCTTATCTCCCTCTTCTTCCAGCCTTCAACTCAGTTCCAACAACAACAACAACTCCCCTGGTTTCAATTACTTCCAAGACAACAAAAATGGAGGCCTAATTTCTGGCTCAGTTCAAATGTCTGCAACAGCTTTATTACAGAAAGCAGCTCAAATGGGTGCCACTGCAAGCTATAAAGCAGCTCAAATGGGTGCCACTGCAAGCAATAGCATGAACTCTCCCATGATGCAAAAAAGCTTTGTTTGTGGCATGGTGGGTCCTGACACTGTCTCTTCTCCTAGAACAACATATTCTGGTGCTATCCAGCAGCATAACTCTTCCTTTGACCATTTCCATCCACACCCTGATCACATGGCTGGGGTTAGTGGTTGTGGAGCATTCACCAACCAATTTTTTCAGAGAGGGCAACAAGAAATGTCATTAATATTTGATTTTAACACAACTGGGTCAACAATGAGTGATATGGGAACGTTCAGCCCAATGTTCATGGGAAGTGACCACAACCCTGGCTTGATGAAGAATGTGGAACAAGAAGTAGCAGACGGAAACCCAATGGGGACATCAAGGTTTGGAGGTAGTGACACTGACATGACCACAGTTCATGATTTTTTGGGTGTTGGAGGTTCAACTTCAAGAGAAACGAGTTTGCATGAACCACAAAAACAACAGCAGCAAAGGTCGGAGTTTGAAGCATCTCACCAGAGGTTGCCAAACTTCCACCACCACCTTCAGTTATGGAGAAACCAATTCGAGACATTTGAGAGCTGCCACAGACCATGA 1551 0.432 MSNVSGDEVSFSSANTVEEVHQEKEQQQPQNHPHGSSSGPSGASNSNSSSNQQQQEATKKKRSLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMTSNMQNEVQDPMATMPLSTSTLFGGPRSLSPSSSSLQLSSNNNNNSPGFNYFQDNKNGGLISGSVQMSATALLQKAAQMGATASYKAAQMGATASNSMNSPMMQKSFVCGMVGPDTVSSPRTTYSGAIQQHNSSFDHFHPHPDHMAGVSGCGAFTNQFFQRGQQEMSLIFDFNTTGSTMSDMGTFSPMFMGSDHNPGLMKNVEQEVADGNPMGTSRFGGSDTDMTTVHDFLGVGGSTSRETSLHEPQKQQQQRSEFEASHQRLPNFHHHLQLWRNQFETFESCHRP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00018 516 MobiDBLite consensus disorder prediction 249 272 - -
Sebi28g00018 516 MobiDBLite consensus disorder prediction 1 17 - -
Sebi28g00018 516 FunFam protein indeterminate-domain 12-like 67 135 - -
Sebi28g00018 516 Gene3D Classic Zinc Finger 143 222 - -
Sebi28g00018 516 MobiDBLite consensus disorder prediction 1 73 - -
Sebi28g00018 516 SMART c2h2final6 164 184 IPR013087 -
Sebi28g00018 516 SMART c2h2final6 129 159 IPR013087 -
Sebi28g00018 516 SMART c2h2final6 88 110 IPR013087 -
Sebi28g00018 516 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Sebi28g00018 516 MobiDBLite consensus disorder prediction 461 488 - -
Sebi28g00018 516 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Sebi28g00018 516 MobiDBLite consensus disorder prediction 29 61 - -
Sebi28g00018 516 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Sebi28g00018 516 Gene3D Classic Zinc Finger 66 133 - -
Sebi28g00018 516 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
Sebi28g00018 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Sebi28g00018 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 484 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00018 Sebi-Chr28 273519 276155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00018 59 221 IDZ Gene Family AT3G50700 87.117 3.82e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi28g00018 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00018 - - gmx:100782774 603.208