Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00016 ATGAGTGATAACATATTGGGCAAAGTCTCAGACAGAGAAGGCTTTATTAAGTACAACAATTCTGCAACTTCAAGTGACAGTACTCATCATCATCAGCAAGATGGGGGTCTCATTAGAGAGCAAGATCGGTTGCTTCCAATTGCTAATGTGGGGCGGATTATGAAGCAAATCCTCCCTCCTAATGCCAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTCTCTGAGTTTGTTAGTTTTGTGACTGGGGAAGCTTCTGATAAGTGCCACAAGGAGAAGAGGAAGACTGTGAATGGAGATGATATTTGCTGGGCCTTGGCTACCTTAGGGTTTGATGACTACGCTGAGCCACTCAAAAGGTATTTGCATCGCTATAGGGAATTGGATGGGGAAAGAGCCAATCAAAATAAGGCCAATGAAGAAAACAATATTGAAACATATAACTATGAAGGTAAGCTACCATCTTCTTCTTCTGGTACCCCAATAGTGATGTTTAATGTCACTGATAGGAGCAGCAGTGGCCCTCAGTCCCGGGGATTTTGA 549 0.4281 MSDNILGKVSDREGFIKYNNSATSSDSTHHHQQDGGLIREQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELDGERANQNKANEENNIETYNYEGKLPSSSSGTPIVMFNVTDRSSSGPQSRGF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00016 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi28g00016 182 FunFam Nuclear transcription factor Y subunit B-3 33 155 - -
Sebi28g00016 182 SUPERFAMILY Histone-fold 41 147 IPR009072 GO:0046982
Sebi28g00016 182 Coils Coil 132 152 - -
Sebi28g00016 182 MobiDBLite consensus disorder prediction 141 182 - -
Sebi28g00016 182 Gene3D Histone, subunit A 31 155 IPR009072 GO:0046982
Sebi28g00016 182 MobiDBLite consensus disorder prediction 135 182 - -
Sebi28g00016 182 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Sebi28g00016 182 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Sebi28g00016 182 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Sebi28g00016 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00016 Sebi-Chr28 245583 246131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00016 15 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.407 1.10e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi28g00016 CBFD_NFYB_HMF 2.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00016 K08065 - vvi:104879763 232.646