Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00009 ATGGTTGAAACCAGACGAGGCTCTTCTACTTCCAAGCGAGCTCTCTCTTCGCCTTCTCCTCCTAACACCAAACGATCCAAGGTCTCATCTTTACTCCACTTCTTTGACTCAAATTCTCTCCTTCCTCATCTGGGTATGCAATTTTCCTCTCAATTCTTGATGGGTATTGATCGGTTGTTTGTGATGACCCAGCTCTCCGAGGATGCCTCATCCACAAACCTGCCCTCCGCGGGAATTAGTGCTCCGGTCAACGAATCTGGTGAACCGGAGCTACGGCCCCCTGATCTGCCAGATACGGCGTCGTTGAAGGCTGTGGATATTTGTGATGCAGACAAGTCTGCTTCTGTGCTTGTTAAAGCCGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACTGCGGAGAAGTCTAAGGTGGCTGGTACGGGGTCAGCGCCTGGTCGGTCGAAGAAACGCCCCACGAAATCGAGCCCCAAGGCTGCATGGGGGAAGCTCCTCTCTCAGTATTCCCAGAATCCTCACTTGTCCATGAGTGATCCTATCATTACTGTTGGTCAAGGTCGTCAGTGTAATTTGCCTCTTAAAGATCCCACTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGTTCTTCAGTTGCCTTACTAGAAATTACAGGGGGTAAAGGTTCCGTTCAAGTTAATGGCAAGACCTACCGAAGGAATGCCCGTTTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAACATGCTTATATCTTTCAGCAGCTCAAAAATAATAATATAACTACTTCCGGTGTACCTTCTGTGAGTATTTTAGAAGCCCAAAGTGCTCCAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAGCTGTAGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATCTATCTCTCCTTCCACCTCCTGCTAAAACTTGCAAGAATGTGCAACAAAATGCTGATATTTCATCACTCCCTTCTGGCCATGGTGATGATGTTCCAGACAATGAAATGAAGGATGGCACCAATAATGGTGAACCTGATGGAGCCTTTTCTGCGGAGAAAACTGTTCTTGCATCCTCTACCACTGTTAATGAAAATCCTAGCCTTGATACCATGGAAGTCGATGCCAATGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACCTGCAAATTGAGGCCATTACTGCGCATGCTTGCTGGTTCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCGACCAGGCGACAAGCATTCAAGGAAAGTTTACAACAGAGAATTCTCAGTGCTGAGAATATTGATGTCTCATTTGAAAATTTCCCGTATTACCTAAGTGATACGACAAAGAATGTTTTGATTGCATCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCGTCAGTGTCTCCACGGATATTGTTATCTGGTCCTGCAGGTTCGGATATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTATTAATTGTGGATTCTCTTTCTCTGCCTGGTGGAACACCATTGAAGGAAATTGATTCTCCTAAAGAAAGTTCAAGGTCTGAAAAGCCAGCTGTGCTGGGTAAGAGAAGTGCCCAGGCTGCTCCATTACATCATAAGAGGCCTGCTTCTAGTGTTGATGCTGAAATTATAGGTGGGTCTACATTAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTACTCTTAAAACAGGTGATCGAGTAAAATTTGTTGGTAGCTTTCCAACTCACGTCTCATCACTACCGAATAATCCAAGGGGACCAAGCTATGGTTGTCGGGGCAAAGTTCTCCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGATTTGATAAATCGATTCCAGATGGCAATGACCTTGGAGGCCTTTGTGAAGATGATCGTGGCTTCTTTTGTTCTGCAAATAGTTTACTACGGGTAGATGGTTCTGGAGGGGATGACCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCTAATCAAAGCAAAAGCGATGCACTAGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTCAGAAGTCTTGAAAAGTAAATTTGAAAGCTTGCCCCAGAATGTTGTGGTAATTGGCTCTCATACCCAGCTGGACAGTCGTAAGGAGAAGACCCAACCTGGCGGTCTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTCCCGGATAACTTTAGTAGACTACATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAGCTTAGTCGCCTCTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCCTTACTTTCTGATTGGAAGCAACAGTTAGAACGTGACATTGAAACTATGAAAGCTCAGTCCAACATTGTCAACATTTGTTCAGTTCTCAACAAAATTGGATTGGATTGCCCTGACCTGGAGACTATTTGCATCAAAGATCAAACTCTAACTACTGAAAGTGTTGAGAAGATTATTGGCTGGGCTATAAGTTACCATTTTATGCATTCAACTGAAGCATCTACCAAAGAATCTAAGCTTGTGGTATCTGCAGAAAGCATTAAATATGGGTTTAGCATTCTACAGGGCATTCAAAATGAGAGCAAGAATTTGAAAAAGTCTTTGAAGGATGTAGTTACTGAGAATGAATTTGAGAAAAAATTGCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGCAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGCTGATGAGGTTGGTAGAATATGTCATTTATATCTTTGA 3261 0.4293 MVETRRGSSTSKRALSSPSPPNTKRSKVSSLLHFFDSNSLLPHLGMQFSSQFLMGIDRLFVMTQLSEDASSTNLPSAGISAPVNESGEPELRPPDLPDTASLKAVDICDADKSASVLVKAEALVSPQCLGETAEKSKVAGTGSAPGRSKKRPTKSSPKAAWGKLLSQYSQNPHLSMSDPIITVGQGRQCNLPLKDPTVGNVLCKLSHIERGGSSVALLEITGGKGSVQVNGKTYRRNARLILSGGDEVVFGSSGKHAYIFQQLKNNNITTSGVPSVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNLHKDLSLLPPPAKTCKNVQQNADISSLPSGHGDDVPDNEMKDGTNNGEPDGAFSAEKTVLASSTTVNENPSLDTMEVDANVDADVGKMTAATCKLRPLLRMLAGSCPEFDLSGSISKILEERRELRELLKDVDTPTILASTRRQAFKESLQQRILSAENIDVSFENFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPAGSDIYQETLSKALAKHFGARLLIVDSLSLPGGTPLKEIDSPKESSRSEKPAVLGKRSAQAAPLHHKRPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKTGDRVKFVGSFPTHVSSLPNNPRGPSYGCRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANSLLRVDGSGGDDLDKVAINEIFEVASNQSKSDALVLFIKDIEKAMVGNSEVLKSKFESLPQNVVVIGSHTQLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLSRLFPNKVTIQLPQDEALLSDWKQQLERDIETMKAQSNIVNICSVLNKIGLDCPDLETICIKDQTLTTESVEKIIGWAISYHFMHSTEASTKESKLVVSAESIKYGFSILQGIQNESKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFADEVGRICHLYL 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00009 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1082 IPR027417 -
Sebi28g00009 1086 Gene3D - 971 1082 IPR027417 -
Sebi28g00009 1086 MobiDBLite consensus disorder prediction 134 160 - -
Sebi28g00009 1086 SUPERFAMILY SMAD/FHA domain 161 254 IPR008984 GO:0005515
Sebi28g00009 1086 MobiDBLite consensus disorder prediction 558 596 - -
Sebi28g00009 1086 Pfam ATPase family associated with various cellular activities (AAA) 1013 1082 IPR003959 GO:0005524|GO:0016887
Sebi28g00009 1086 MobiDBLite consensus disorder prediction 1 26 - -
Sebi28g00009 1086 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 456 1079 - -
Sebi28g00009 1086 MobiDBLite consensus disorder prediction 70 98 - -
Sebi28g00009 1086 Gene3D - 160 270 - -
Sebi28g00009 1086 Coils Coil 933 953 - -
Sebi28g00009 1086 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00009 Sebi-Chr28 137957 150016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00009 1008 1081 Calmodulin-binding Proteins AT3G56690 44.595 7.93e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi28g00009 - - gmx:100801477 1671.37