Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi28g00001 ATGTCCTCTGCAGATGCAACTTGGATGATTTCTTTCTCATGTTCACCCTCAGATGATACATTTCTTGGAACTTCAACTCTACCCTTGTGGCTGAGATTCATTTTCCTCTCCCCATGTCCTCAGAGAGCTCTGTTATCTGCTGTTGACATCCTACTTTTGTTCACCTTATTTGTGTTTGCTGCCATAAAGCTCTATTCTAGGTTCACTTCCAATGGCACCCCCAACTCTGAGCTCAACAAGCCTCTTATCAGAAATAGAAGAGCTTTTGAAGGAACAACTATTTGGTTTAAGCTAACTCTAACTGCAACGGCTGTTTTAACTATACTCTACACAGTCCCTTGCATTTTGGTATTTAGCAGTTCCACCGAGGTGCCATGGAAGCTAGTTGATGGACTATTTTGGTTGTTTCAGGCCATAACACAATTAGTCCTTGCAATCTTAATCATCCATGAGAAAAGATTTCAAGCTGTTTCTCACCCTTTATCTCTTCGAATATATTGGATTGCAAATTTCGTGATTGTTTCTTTGTTCACTGCTTCTGGGGTTATACGTTTGGTTTCAATGGATGTGGGAGAGGGGAAGTACTTCAGCTTTATGGTAGATGATACCATCTCTTTCATTTCTCTCCCTTTGTCACTTTTTCTCCTTTGTGTTGCGATTAAAGGATCCACCGGGATTATGTCTAGTGAAGAAACGCAACCTCTTATTGATGATGAAACCAAACTATATGATCCAACTTTGACCAAATCCAACGTTACTGGTTTTGCTTCAGCTTCTGGTGTATCCAAGGCCTTTTGGATTTGGTTAAACCCCTTATTGAGTAAAGGGTATGAGTCACCGCTTATTATTGATGAAATTCCAACTCTTTCCCCACAGCATAAAGCTGAGAGGATGTCAGTTATCTTTGAATCAAAATGGCCTAAATCAGAAGAGAGGTCAAAGCACCCTGTTCGAACCACATTGGTTAGGTGCTTCTGGAAGGAGATAGCCTTCACTGCCTTCCTTGCTGTTATTAGGCTAAGTGTCATGTTTGTAGGGCCAGTTCTTATTCAAGATTTTGTTGATTTCACAGCAGGGAAAGGTAGTTCTGTGTATGAAGGATACTACCTTGTTTTGATTCTCCTATGTGCTAAGTTTGTTGAAGTTTTGACAACTCACCATTTCAACTTCAACTCTCAGAAACTTGGGATGCTTATTAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGTTGAGGCTATCATGCTCTGCTAGGCAGGACCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATACCCAGCAACTATCTGATATGATGCTTCAGTTACATGCTGTGTGGATGATGCCATTTCAGGTTGGTATTGGCTTATTTTTGCTTTACAATTGTCTTGGTGCCGCTGTGATTACGGCATTGGTTGGACTTCTTGGCGTTCTTGCCTTTATTGTGGTGGCTACTCGAAAGAACAAGCGTTACCAGTTTAGTGCAATGATGAATCGTGATTCAAGAATGAAAGCTGTGAATGAGATGCTCAATTACATGCGTGTCATCAAGTTCCAGGCATGGGAAGAGCATTTCAATGACAGGATTTTGGGTTTCCGTAACTCAGAGTTTGGGTGGATTTCCAAGTTTATGTACTCAGTTTGTGGCAATATTATTGTGTTGTGGAGCACCCCATTAATGATATCAACTCTCACATTTGGTACAGCGATTTTCCTTGGGGTTCCACTTGATGCAGCAACGGTTTTCACTACAACAACTGTTTTTAAGATCCTGCAGGAACCTATTAGGACGTTTCCTCAGTCAATGATATCTCTTTCACAAGCACTGGTATCACTTGGGAGGCTAGATAGGTACATGTCTAGCAGGGAATTGTCAGATGATTCAGTTGAGAGAGAAGAAGGTTGTGATGGACACATTGCTGTGGAGGTCAAAGATGGGACCTTTAGGTGGGATGATGATGGCCAAGAGAAGGACTTGAAAAATATCAATTTGAAGATTAATAAAGGGGAGCTCACAGCTATTGTTGGGACTGTGGGGTCAGGGAAATCTTCTCTTCTTGCTTCAATTCTTGGTGAGATGCACAGAGTTTCTGGAAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGAACAGGCAGAAGTACAATGAAGTTGTTAGGGTTTGTTGCTTGGAAAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAAATTGGTGAGCGTGGGATTAACCTAAGTGGGGGCCAAAAGCAGCGTATACAACTTGCCAGAGCTGTATATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCACTGAAATATTTAAGGTGGTGATGAGGGATGGAATGATAGTCCAATCAGGGAAGTACAATGATCTACTCAATTCTGGAATGGATTTTAGTGCTCTGGTAGCAGCACATGAGACATCTATGGAACTAGTAGAACAGGGTGCAGCAGTCATGACTGGTGAAAGTTTGAACAGACCAATGAAATCTCCAAAGGCAGCTTCTAATCACAGAGAAGCCAATGGTGAAAGCAATTCTCTTGACCAACCCAAGTCTGACAAGGAAGGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGGAAAGGTTATTTTCTTGCTTCGTCACGTGAGTTAACTCGCCTGGATTCAATCACAAAAGCACCTGTTATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACAATCCGCGCATTCAAAAAGCAGAATGAATTTTGTTTAGAAAATATTAAACGGGTGAATGCTAATTTGAGAATGGATTTCCACAACTTCAGTGCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTCGGAAGCTTAGTTTTTTGCACTTCTGCTATGTTCATGATCATGTTACCCAGCAGTGTCATCAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGATTGTCATTAAATGCTGTGATGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATCCCATCAGAAGCATCATGGAACATTAGGGATCGTTTGCCTCCTCCAAATTGGCCCGGTCAAGGTCATGTTGACATCAAAGATTTGCAGGTCAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGCATTACATTAAGCATTAGTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACTTTGATTCAAGTTTTTTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATAACTGCCTTAGGACTTCATGATCTTAGATCTCGGTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTTGAAGGAACCGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGAGATATGGAAGGGTTTGGAACGTTGTCAATTAAAAGATGCAGTGGCTTCTAAGCCTGAGAAACTTGACTCTCTAGTGGTGGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGAGGGTTATGCTTAAGCAAAGCAGGCTATTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACGGATGCTGTGATTCAGAAGATCATCAGAGAGGAATTTGCAGCGCGTACCATCATCAGCATTGCTCATAGAATACCAACAGTCATGGACTGTGATAGAGTTTTAGTTGTAGATGCAGGGCGAGTTAAGGAATTTGACAAACCCTCCATCTTGCTCCAGAGGCCATCACTGTTTGGAGCGTTGGTTCAAGAGTATGCTAACCGCTCCAGTGGATTATAA 3933 0.4167 MSSADATWMISFSCSPSDDTFLGTSTLPLWLRFIFLSPCPQRALLSAVDILLLFTLFVFAAIKLYSRFTSNGTPNSELNKPLIRNRRAFEGTTIWFKLTLTATAVLTILYTVPCILVFSSSTEVPWKLVDGLFWLFQAITQLVLAILIIHEKRFQAVSHPLSLRIYWIANFVIVSLFTASGVIRLVSMDVGEGKYFSFMVDDTISFISLPLSLFLLCVAIKGSTGIMSSEETQPLIDDETKLYDPTLTKSNVTGFASASGVSKAFWIWLNPLLSKGYESPLIIDEIPTLSPQHKAERMSVIFESKWPKSEERSKHPVRTTLVRCFWKEIAFTAFLAVIRLSVMFVGPVLIQDFVDFTAGKGSSVYEGYYLVLILLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGAAVITALVGLLGVLAFIVVATRKNKRYQFSAMMNRDSRMKAVNEMLNYMRVIKFQAWEEHFNDRILGFRNSEFGWISKFMYSVCGNIIVLWSTPLMISTLTFGTAIFLGVPLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVEREEGCDGHIAVEVKDGTFRWDDDGQEKDLKNINLKINKGELTAIVGTVGSGKSSLLASILGEMHRVSGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGTEIFKVVMRDGMIVQSGKYNDLLNSGMDFSALVAAHETSMELVEQGAAVMTGESLNRPMKSPKAASNHREANGESNSLDQPKSDKEGSKLIKEEERETGKGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFKKQNEFCLENIKRVNANLRMDFHNFSANAWLGFRLELLGSLVFCTSAMFMIMLPSSVIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTNIPSEASWNIRDRLPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDITALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKGLERCQLKDAVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREEFAARTIISIAHRIPTVMDCDRVLVVDAGRVKEFDKPSILLQRPSLFGALVQEYANRSSGL 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi28g00001 1310 Gene3D ABC transporter type 1, transmembrane domain 904 1049 IPR036640 GO:0005524|GO:0016020
Sebi28g00001 1310 Gene3D ABC transporter type 1, transmembrane domain 311 621 IPR036640 GO:0005524|GO:0016020
Sebi28g00001 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi28g00001 1310 Gene3D - 1052 1300 IPR027417 -
Sebi28g00001 1310 CDD ABC_6TM_ABCC_D2 906 1043 IPR044726 GO:0140359
Sebi28g00001 1310 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 257 904 - -
Sebi28g00001 1310 MobiDBLite consensus disorder prediction 856 898 - -
Sebi28g00001 1310 Pfam ABC transporter 1085 1233 IPR003439 GO:0005524
Sebi28g00001 1310 SUPERFAMILY ABC transporter transmembrane region 906 1048 IPR036640 GO:0005524|GO:0016020
Sebi28g00001 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 837 IPR027417 -
Sebi28g00001 1310 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Sebi28g00001 1310 FunFam Multidrug resistance-associated protein 1 626 812 - -
Sebi28g00001 1310 FunFam ABC transporter C family member 3 1051 1302 - -
Sebi28g00001 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1068 1302 IPR003439 GO:0005524
Sebi28g00001 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1031 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi28g00001 1310 FunFam ABC transporter C family member 10 313 626 - -
Sebi28g00001 1310 Pfam ABC transporter 662 795 IPR003439 GO:0005524
Sebi28g00001 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 871 IPR003439 GO:0005524
Sebi28g00001 1310 Gene3D - 622 860 IPR027417 -
Sebi28g00001 1310 MobiDBLite consensus disorder prediction 883 898 - -
Sebi28g00001 1310 Pfam ABC transporter transmembrane region 906 995 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi28g00001 1310 Pfam ABC transporter transmembrane region 331 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi28g00001 1310 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
Sebi28g00001 1310 CDD ABCC_MRP_domain2 1066 1286 - -
Sebi28g00001 1310 SUPERFAMILY ABC transporter transmembrane region 321 623 IPR036640 GO:0005524|GO:0016020
Sebi28g00001 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1060 1301 IPR027417 -
Sebi28g00001 1310 CDD ABCC_MRP_domain1 644 809 - -
Sebi28g00001 1310 SMART AAA_5 671 932 IPR003593 GO:0016887
Sebi28g00001 1310 SMART AAA_5 1094 1278 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi28g00001 Sebi-Chr28 3454 11753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi28g00001 644 852 Calmodulin-binding Proteins AT2G36910 29.297 5.22e-19 91.7