Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi288g00040 GTGTGCCCTCACCTAGATGACAAGCAAAGGAAAGCCTTGGGTGATGCGCTCGGGCTCGACCTTTTGAAAGTCAAGTTTTGGTTCCAGAACAAGCGTACCCAAGTGAAGGCTCAACAAGAACACCATGAGAATGCTCTTCCTAATGGTGAGAATGAAAAGCTTCGTGCTGACAATGCGAGGTGCAAGGAGGCACCGAGTCATGCTACATGCCCTACCTGTGGAGGGCCTTCTGTTGGTGAAATGTCCTTTGACGAACAACACTTGAGAATTGAGAATACCCGATTAAGAGAAGAGATTCAAAGGATGTCGGGAATGACAGTGAAAATGATGGGAAAGCCCGAGACTCCGCTCTCTTACAATCACATGACTTTGTGCACGCTTGATCTTCGGGGTGGTAATTATGGAGCACAGTCAGGCACGATTGCAGAAATGTATGGTGGTGGTAACTTTCTCCTAAGGTCACTCCCTGTTCCTATGGAAGCTGAGAAAACCTTGATTGTGGACCTTACTGTTTCTGGAATGGAGGAACCGATAAGCTTGGCTGCCTCTAGTGAGCCTTTATGGAGGAACTGA 573 0.4782 VCPHLDDKQRKALGDALGLDLLKVKFWFQNKRTQVKAQQEHHENALPNGENEKLRADNARCKEAPSHATCPTCGGPSVGEMSFDEQHLRIENTRLREEIQRMSGMTVKMMGKPETPLSYNHMTLCTLDLRGGNYGAQSGTIAEMYGGGNFLLRSLPVPMEAEKTLIVDLTVSGMEEPISLAASSEPLWRN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi288g00040 190 Gene3D - 1 52 - -
Sebi288g00040 190 Pfam Homeodomain 2 36 IPR001356 GO:0003677
Sebi288g00040 190 ProSiteProfiles 'Homeobox' domain profile. 1 38 IPR001356 GO:0003677
Sebi288g00040 190 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 189 IPR042160 -
Sebi288g00040 190 SUPERFAMILY Homeodomain-like 2 47 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi288g00040 Sebi-Chr288 1222024 1222829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi288g00040 2 188 Homeobox Transcription Factor Family AT4G04890 56.771 1.36e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi288g00040 Homeodomain 8.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi288g00040 K09338 - jre:108990742 227.254