Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi288g00010 ATGGGAGTTCCAGAGAAAGACCCTCTTTCCCAATTGAGTTTACCTCCTGGATTTCGGTTTTATCCCACCGACGAGGAGCTCCTCGTTCAGTATCTATGCCGCAAGGTAGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATCGACTTGTACAAGTTCGACCCCTGGGTTCTTCCAAGCAAAGCGATTTTCGGAGAGAAAGAATGGTACTTTTTCAGTCCTAGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCTGGGTACTGGAAAGCCACAGGAACCGATAAGATCATTACCACCGAAGGTAGAAAAGTTGGTATCAAAAAAGCCCTCGTTTTCTATGTTGGCAAAGCTCCTAAAGGCACCAAAACCAATTGGATTATGCATGAGTATCGCCTTCTAGACTCTTCGCGAAAGAACACTGGCACCAAGTTGGATGACTGGGTTTTGTGTCGGATATACAAGAAGAACTCAAGCGCACAAAAAGCTGCATCAAACGGCGGCGTTTCGAGCAAAGAGTACACTCAATACAGCAACGGTTCGTCCTCCTCGTCGTCGTCCCACCTCGATGACGTTTTGGAATCGCTGCCTGAGATTGACGACCGGTGCTTCATGCTGCCACGTGTCAATTCGCTGAGAACGCTGCAGCAGCGGGAGGAGGAGAAGCTCAATCTTCAGAACCTCGGTGCAGGGAGTTTGATGGATTGGGCTAACCCAGCGGTTCTGAATACGGTTTCGGAGTTCGGTTCGGCGAACCAAGTGGTTCAGGGGCAAGCTCAGGGGATGGTGAATTTCGGTGGCTGTAATGACCTTTATGTCCCTTCGGTTCCTTCGCTGTGCAACGTGGACTCGTCAGAGAAGATGGGGAAACCGGTGGAGGAGGAGGTTCAGAGCGGTGTGAGAACCCAACGGGTCGAGAATTCCGGGTTTTTCCAGCGCGGCCCGAATGATTTCACGCAGGGATTCTCAAATTCGGTGGACCCGTATGGGTTCAGGTACCCGGTTCAACCGGTTGGGTTTGGGTTCGGGCAATGA 1053 0.5128 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIYKKNSSAQKAASNGGVSSKEYTQYSNGSSSSSSSHLDDVLESLPEIDDRCFMLPRVNSLRTLQQREEEKLNLQNLGAGSLMDWANPAVLNTVSEFGSANQVVQGQAQGMVNFGGCNDLYVPSVPSLCNVDSSEKMGKPVEEEVQSGVRTQRVENSGFFQRGPNDFTQGFSNSVDPYGFRYPVQPVGFGFGQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi288g00010 350 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Sebi288g00010 350 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Sebi288g00010 350 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Sebi288g00010 350 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Sebi288g00010 350 FunFam NAC domain-containing protein 72-like 23 167 - -
Sebi288g00010 350 MobiDBLite consensus disorder prediction 168 195 - -
Sebi288g00010 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi288g00010 Sebi-Chr288 251239 252506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi288g00010 1 277 NAC Transcription Factor Family AT3G15500 63.448 7.57e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi288g00010 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi288g00010 - - tpra:123895211 567.77