Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi287g00029 ATGGCCATGGCTGCTGCTCTGCGACGCGAAGGGAAGCGTTTGGCCCCTCTCATCTCTCCTCAACCAATCAATGCTATTCGATCTTCTCTCATCTCTCCAGACCAAGCCCCCAATGGAATTCGCTCTATTTCAACTCAAGTAGTGAGAAACCGGATGAAGAGTGTAAAGAATATCCAGAAAATTACCAAGGCAATGAAAATGGTTGCTGCATCAAAGCTAAGAGCTGTTCAAAGTAGAACTGAAAATTCACGCGGCCTGTGGCAGCCATTTACAGCTCTTCTGGGTGACGCTCCAAGTGTTGATGTCAAGAAGAGTGTTGTTGTTACCATTTCTTCAGACAAAGGTCTTTGTGGTGGAATCAATTCTACAGCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCTGGGCCTGAAAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAATTGGTTCGTGACTCAAAGAAAGACATCCTGCTTAGCTTAACTGAGTTGCAGAAAAATCCTCTGAATTATACCCAGGTGTCTGTCTTGGCAGATGACATCCTAAAGAATGTGGAGTTTGATGCATTGAGGATTGTTTTCAACAAATTTCATTCGGTTGTGCAATTTCTGCCAACAGTGTCAACTGTACTATCTCCTGAGATTGTTGAGAGAGAGGCTGAATCTGGAGGAAGGCTTGGGGAACTGGATTCCTATGAGATTGAAGGTGGCGAGACAAAATCAGAGATTCTTCAGAATCTGGCAGAGTTCCAGTTTTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAACGCAGGGGAGATGCTTGATCGTCTCACCCTCACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 972 0.4465 MAMAAALRREGKRLAPLISPQPINAIRSSLISPDQAPNGIRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQSRTENSRGLWQPFTALLGDAPSVDVKKSVVVTISSDKGLCGGINSTAVKISRVLHKLNSGPEKETKYVILGEKAKAQLVRDSKKDILLSLTELQKNPLNYTQVSVLADDILKNVEFDALRIVFNKFHSVVQFLPTVSTVLSPEIVEREAESGGRLGELDSYEIEGGETKSEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi287g00029 323 Gene3D - 68 280 - -
Sebi287g00029 323 PRINTS ATP synthase gamma subunit signature 299 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 PRINTS ATP synthase gamma subunit signature 102 121 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 PRINTS ATP synthase gamma subunit signature 194 211 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 PRINTS ATP synthase gamma subunit signature 268 287 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 ProSitePatterns ATP synthase gamma subunit signature. 307 320 IPR023632 -
Sebi287g00029 323 NCBIfam ATP synthase F1 subunit gamma 44 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 Gene3D ATP synthase, gamma subunit, helix hairpin domain 48 318 - -
Sebi287g00029 323 CDD F1-ATPase_gamma 44 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 PIRSF ATP_synthase_gamma 11 321 - -
Sebi287g00029 323 PANTHER ATP SYNTHASE GAMMA CHAIN 39 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 FunFam ATP synthase subunit gamma 68 280 - -
Sebi287g00029 323 Pfam ATP synthase 46 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 Hamap ATP synthase gamma chain [atpG]. 42 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sebi287g00029 323 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 45 321 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi287g00029 Sebi-Chr287 839848 843834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi287g00029 13 321 Primary Pumps ATPases AT1G15700 29.167 7.27e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi287g00029 K02136 - qsa:O6P43_002215 555.058