Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi286g00025 ATGGATCCTGTTGAGCAAACTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACAGCTGAAGAAGCTGATTTTATGAGGCAGTTGCTTGGTAACTGCTCAGTCCCTGAGCAAGTCTATGAAAATTACAATTTGGAAATTCCATCTGCATTATGGCCTGGCCATGAATCCACAATAGTAACTGTGACAGGCATCAATAGCACTTCACATTTTTCTGCAGATACTGATAATAGTCATTCTAATTTTTTTGCCTTTTTACAAGGAAATAATGTATTTCCTACTACAAGTGCTGGTAACTGCTGCTTGAATGATACAGTAGCCAATATTGGCTACATGTCCATGAGTGATGTTGCCAAATTCAACCCATGTAGTGTTCAAGGGAATGATAGCCAACAGATAAATGAAAACATGGATGAAGAGTTAGCTCTAGAGTTTATTGGTGACAAGAATTTGCAGGCTCACAAGGAATGTGAAGAACTGGTTTCTGAACCAGCTGAAGAGGACATAACCAGCAACCTGGAAAAGTCAGGAAAAAGATCTAGAACCTCAATGGAGGTGAGAAAGAACAAGGCAAATGTTAAAGCTAGGAAGAAACCAAAATCTTCTTCCATAAGCAACACTGAAGAGGATAGAAGTGCTGGTCGTCAGGGGCAGAGCTTGAGTAGTTGTTGCTCAGAGGATGATGACTCTAATGCTTCTCAGGAGCTAAATGGAGGAGGCTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCACTGAAGTTAAAGGGAAAATCAAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAGCCTGGTCCCCAATGGAACCAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGGCTAGACCTCAATATAACCCCAACCAAACAATCATGA 1053 0.4074 MDPVEQTSEEWSSLSGLYTAEEADFMRQLLGNCSVPEQVYENYNLEIPSALWPGHESTIVTVTGINSTSHFSADTDNSHSNFFAFLQGNNVFPTTSAGNCCLNDTVANIGYMSMSDVAKFNPCSVQGNDSQQINENMDEELALEFIGDKNLQAHKECEELVSEPAEEDITSNLEKSGKRSRTSMEVRKNKANVKARKKPKSSSISNTEEDRSAGRQGQSLSSCCSEDDDSNASQELNGGGSSSLSLKDSVALKLKGKSRSSRGSATDPQSVYAKKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi286g00025 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Sebi286g00025 350 MobiDBLite consensus disorder prediction 206 248 - -
Sebi286g00025 350 CDD bHLH_AtIND_like 265 327 - -
Sebi286g00025 350 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 118 322 IPR045843 GO:0003700|GO:0006355
Sebi286g00025 350 MobiDBLite consensus disorder prediction 161 276 - -
Sebi286g00025 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 329 IPR036638 GO:0046983
Sebi286g00025 350 MobiDBLite consensus disorder prediction 168 190 - -
Sebi286g00025 350 FunFam Basic helix-loop-helix transcription factor 265 322 - -
Sebi286g00025 350 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
Sebi286g00025 350 Gene3D - 264 321 IPR036638 GO:0046983
Sebi286g00025 350 SMART finulus 270 319 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi286g00025 Sebi-Chr286 372242 373789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi286g00025 10 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.822 3.47e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi286g00025 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi286g00025 - - gmx:100817334 472.241