Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00106 ATGGCAAATTCTCTCTCATTTCCGGAAGAAATTCTGAACATGAGCATCAACACCAACAGCAGCTTCGATTTTCCTTTCTCACCATCACCGAGCATCTTTGACATGATGGAACCACTACCACCACCAGATCAAAACACTCTTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACGAATCTTTATTCGATTTGTTCCCCACCATCACCACAGAGGATGCTACAAACACCAACATTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACCAATCTATATTCGATTTGTTCCCCACCATCACCATAGAGGATGCTACAAACACCAACACTGTTGCTCCTCTCGCATCCACCAAAATCAACCAGCCTCTTCCTTCACCTCCAACAAGCTCTAATGTCGTAGATTGCTCTGAGGTACTCAACAGCACTCCAGCCACACCGAAGTTCTTCTCCATTACGTCATCGCCAAACGAAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCAGAGAACGATGGAGAAAAAAATGCAGATGCAGCGAAAGGAGACGAAAATCAAATTCAAGATGAGATCACCAACAAACATGGAATGGGAATTAGGGTGAAAGAAAAGAAGATGAAGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGATGGCGCAAATATGGCCAAAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACTTATGACGACAACCACACCCACCCCTGCCCGAACTTGTCCAAACATCGTTCTAGCCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCCACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCCGGTGCTGGAGCAACAGCGCCAGCAATTTCAGAACCTGCAGAATAATGATGTTCAATATCGTGCCAATGCGTCGTCGTTTAGTAGCAGCAGCAGCTTCCTTCAGGATCACAACCAAGGTGGTAGTTTTGTGCCATCTACATGGATGAGTGTTGCTCCTCGTCAAGGTTTGTTACCAGCTGACAATGGGCTTCTTGAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 1218 0.4663 MANSLSFPEEILNMSINTNSSFDFPFSPSPSIFDMMEPLPPPDQNTLSFKELLCTKDFNSNESLFDLFPTITTEDATNTNISFKELLCTKDFNSNQSIFDLFPTITIEDATNTNTVAPLASTKINQPLPSPPTSSNVVDCSEVLNSTPATPKFFSITSSPNEAAVGGNKSPEAENDGEKNADAAKGDENQIQDEITNKHGMGIRVKEKKMKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDDNHTHPCPNLSKHRSSLGYRAYGSGRGNATAANSVGFSSSTRPVLEQQRQQFQNLQNNDVQYRANASSFSSSSSFLQDHNQGGSFVPSTWMSVAPRQGLLPADNGLLEDIIMSAQMQRGQGIN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00106 405 MobiDBLite consensus disorder prediction 151 195 - -
Sebi285g00106 405 FunFam WRKY transcription factor 57 216 290 - -
Sebi285g00106 405 Gene3D WRKY domain 217 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi285g00106 405 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 335 IPR044810 GO:0003700
Sebi285g00106 405 MobiDBLite consensus disorder prediction 151 165 - -
Sebi285g00106 405 Coils Coil 327 347 - -
Sebi285g00106 405 Pfam WRKY DNA -binding domain 231 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi285g00106 405 SMART WRKY_cls 230 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi285g00106 405 MobiDBLite consensus disorder prediction 172 195 - -
Sebi285g00106 405 ProSiteProfiles WRKY domain profile. 225 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi285g00106 405 SUPERFAMILY WRKY DNA-binding domain 223 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00106 Sebi-Chr285 1248605 1250185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00106 172 290 WRKY Transcription Factor Family AT4G18170 55.833 6.36e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi285g00106 WRKY 8.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00106 - - gmx:100808190 231.876