Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00104 ATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCTTTGCATAATCAACATACTCTTCCTGGGTGTTGGTCCCATCCAAGTCCGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTTCAGTTAAGGAAGTCGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCACTGGCAGCTATTAATGCACTCAATGGAATCTACACAATGAGAGGTTGTGAACAACCATTGATTGTCCGGTTTGCTGATCCAAAGAGACCTCGTCAAGGAGAATCCAGGGGTTCTGCATTTGGGGGTCCAGGGTTTGGTCCTAGATTTGATGCACCAGGCACTAGACTTCCATCCAACATTTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCCTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATTCTGGTTTTCATGGCATGGGCCCTCCGTTGCTTCCAAGATCTGGTGACATGGCAGCGTCTATAAATGGCGGTGGCCCTATGACTGGCATGGGAGTCCCCAGAGATGGTCGTTTTCAAGTTCCGTCATCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGTCAATCAACAAATATCACCATTGAAGAAACCTATTCAATCATCTCAGGAGTTACCACATTCCCACCAGTTGTATCCTCAAGCTCCGATGCCCTACCCACAAACATCAACACTTCCATCTCTTAGGCAGCATGGTCAGCCTCAACTTCCTCTCTCTGGTAGTCCTCTTCCATCACAGCTGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAGCAGAGTGCTGTGTCTGCTGCAATTCCTCAGGCCCCTTTTGATACCGGTAGGCAATTTAATACACCATTGACTACACCAAATCAGCAGCAAGTTCCTCCCTCTATGCAACAGCAATCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAGACACAGAATTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCATTACCATCTAAGCAAAATTCAGACACTACTAAAAAGCAGCCTCAATGGGCTGGATCTGTAGCACAGGCAGTGGCCAGCACTCATGTAGCTGCACCTGCTGCAGATGTGCCTCCATCCACATCTGCTACTTCTGCTGTAGCAGCAATAAGCCAGAACACGACTCCTGCAAAATGTAACTGGACAGAACATTTATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAGCTGATATTATCTGAACAGCAAAAGCAACAACAGAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATACTACCCGCCCAGCAAGTTGCACAAATCCAACAGGTACAGCCCCAAAGTCATCTCCAAGGACAGGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCATTCCAGGCATATGGAGTTACAGGTCACCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCTGGACGCTACTCTCAGGTCTGTTTGACCTAA 1770 0.4684 MLPQKKLIRQLELCIINILFLGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGESRGSAFGGPGFGPRFDAPGTRLPSNISDPMGDRMPPPNAWRPMHPPNMGPSSNSGFHGMGPPLLPRSGDMAASINGGGPMTGMGVPRDGRFQVPSSMPQQNFNQPLPQIPPVNQQISPLKKPIQSSQELPHSHQLYPQAPMPYPQTSTLPSLRQHGQPQLPLSGSPLPSQLGLGISGQFPTSQPQTQQSAVSAAIPQAPFDTGRQFNTPLTTPNQQQVPPSMQQQSLQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPLPSKQNSDTTKKQPQWAGSVAQAVASTHVAAPAADVPPSTSATSAVAAISQNTTPAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELILSEQQKQQQRPSVQQSQTQSQPSILPAQQVAQIQQVQPQSHLQGQVLHQQQIQQPSLSSSFQAYGVTGHQNVQEVGYKQLQASVISAGDPGRYSQVCLT 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00104 589 MobiDBLite consensus disorder prediction 205 420 - -
Sebi285g00104 589 MobiDBLite consensus disorder prediction 492 511 - -
Sebi285g00104 589 ProSitePatterns WW/rsp5/WWP domain signature. 461 486 IPR001202 GO:0005515
Sebi285g00104 589 FunFam Flowering time control protein FCA 39 129 - -
Sebi285g00104 589 Gene3D - 454 503 - -
Sebi285g00104 589 ProSiteProfiles WW/rsp5/WWP domain profile. 455 488 IPR001202 GO:0005515
Sebi285g00104 589 PANTHER RNA BINDING PROTEIN 30 401 - -
Sebi285g00104 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 123 IPR000504 GO:0003723
Sebi285g00104 589 SMART ww_5 456 488 IPR001202 GO:0005515
Sebi285g00104 589 MobiDBLite consensus disorder prediction 223 420 - -
Sebi285g00104 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 112 IPR000504 GO:0003723
Sebi285g00104 589 CDD WW 458 488 IPR001202 GO:0005515
Sebi285g00104 589 Pfam WW domain 460 486 IPR001202 GO:0005515
Sebi285g00104 589 SMART rrm1_1 44 119 IPR000504 GO:0003723
Sebi285g00104 589 MobiDBLite consensus disorder prediction 123 188 - -
Sebi285g00104 589 SUPERFAMILY WW domain 460 491 IPR036020 GO:0005515
Sebi285g00104 589 SUPERFAMILY RNA-binding domain, RBD 43 144 IPR035979 GO:0003676
Sebi285g00104 589 Gene3D - 24 132 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00104 Sebi-Chr285 1220880 1228254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00104 8 132 Eukaryotic Initiation Factors Gene Family AT1G71770 31.496 1.02e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00104 - - gmx:100798390 755.747