Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00088 ATGGATGTAAAAGGAAGAAGAAGCAACACCACCTCCACCATCCTGCAGACTAGTAGTGATGAGGAGGATCAGATGGAGCTCCGAAGAGGCCCTTGGACCGTTGATGAGGACCTCACCCTCATCAATTACATTGCCACCCATGGCGAAGGTCGCTGGAATACCCTTGCCCTCTCTGCCGGCCTCAAACGCACAGGAAAGAGTTGCAGATTGAGGTGGCTCAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACTCTCCAAGAACAACTTCTCATTCTCGAGCTCCATACTCGCTGGGGAAACCGATGGTCCAAAATTGCCCAGTATTTACCGGGAAGAACTGACAATGAGATAAAGAACTATTGGAGAACGCGTGTGCAAAAGCTTGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTAA 447 0.4922 MDVKGRRSNTTSTILQTSSDEEDQMELRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00088 148 Gene3D - 86 127 - -
Sebi285g00088 148 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 148 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sebi285g00088 148 MobiDBLite consensus disorder prediction 1 20 - -
Sebi285g00088 148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Sebi285g00088 148 FunFam MYB transcription factor 86 148 - -
Sebi285g00088 148 CDD SANT 102 125 IPR001005 -
Sebi285g00088 148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Sebi285g00088 148 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Sebi285g00088 148 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Sebi285g00088 148 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Sebi285g00088 148 CDD SANT 31 76 IPR001005 -
Sebi285g00088 148 SMART sant 28 78 IPR001005 -
Sebi285g00088 148 SMART sant 81 129 IPR001005 -
Sebi285g00088 148 FunFam Myb transcription factor 29 81 - -
Sebi285g00088 148 MobiDBLite consensus disorder prediction 1 23 - -
Sebi285g00088 148 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Sebi285g00088 148 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Sebi285g00088 148 Gene3D - 26 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00088 Sebi-Chr285 1097313 1098356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00088 25 148 MYB Transcription Factor Family AT1G48000 80.645 1.75e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi285g00088 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00088 K09422 - gmx:778183 257.684