Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00073 ATGGCCGAAACCAAAAACTACATTCGGAACCAACAATTAGAGCTTGAAAAGATACTACAAGAAGCAGAGCATCGTTGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATTATTGGAAGTTTGAATTAACAGCAGATCCACCTGTTAGGCCTCCAGCTGGATCACTTTTCTTGTTTGATCGAAAATCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTCAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAAAACTTTCAACGGAGAAGTTATTGGATGCTTGATGAGAAGTTAGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGCTGCAAGTCTGGCATCTCACATTTGCCTGTAGTTCCAGTAACCCTAGTTGGTAGCTCTCGAAGTAGTTCAGCGCCTTCCTCTACCAAAACAAACTCACCAATACCTGTTGTTCAAACTTCTTTGAGATCAAGTGCATATAAAGTTGATCAGAATAAGGATGTCAACTCACACAATGATCCTAGAGCCTCTTCTCATCCTCAACCTATCAGCAATTCCATACCACACAGTGCACCTCAGCTTGCACATGAAGCCACTGGATTTTCTGAGTTATTGAGGAACCCCGTTATTTCATCATGGACATCTTCTCTCCCTACCTTTTCTCTTGGAACTGGCTTGTCTCCCTGGGCATTAATTCAGAACTCTAGCAGAAATACCGTTAATATGTATGATAAAGAACTTCATGTTGAAGGATCCATTGAAGGTCCTGAGGCAAACTTCAGTGTTCATAAACTAAGCGATGCAAGGTTAGATGCAGTTCGTGGAATGCAAGATGGTATAAATTTCAGAGATAAGCTCATCACTGACATGTATATCCAGCCAGTTACAAGAGTTTCACAGACTGTTAATCAGGTGCAGAAGGAGCATGATTTAGGTTCATTTCTTACACAATTCCATGATCATACTGATCATCCAGTTGTTGCAACTACTACAATCCTAGTTGAAGATGATGGTAATGACAAAGGTGAGTCAGAACATGTTGAATCTGGGGGATTGAAGAAGCTCGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCATTTATTGGGGTACACTTGATGCTCATAATGAGGATAAGGAGGTGTCTAGTTTACACCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAGCAATTATTCAGTATCCATGACTTTTCTCCGGATTGGGCATATGCCGGGATTAGAACAAAGGTTTTAATAGTTGGTACATTTCTGGGGAGTAAAAAGCTTTCTAGTGAGACCAAATGGGGATGCATGTTTGGTGAAATAGAGGTTTCTGCTGAAGTTTTGACAGAGAATGTCATACGGTGTCAGACTCCTTTGCATTCACCTGGTCGCGTTCCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGAGAATTTGAATATCATGAAAATCCTACTAAATTTATAAGTTCTGTGGGTATTAAAGTCTCACCAGAAGATGAGGTACAGCTTCAATTACGACTTCTTAAACTAGTAGAATTGGGACCTGACAAGAAGTGGTTGAAGTGCTCTGTTCCTGAATGTGAGAGATGTAAACTTAAGGGAACAATGTATTCCATGAAAGATGATAGTGGCGTATTTGAAGAAACTTTCCAGATTGATAGAAGTGAACAGATAAACCCTAGAGATGTATTATTTCAGAGATTAATCAGAGACAAGATTTATGAATGGTTGGTGTTTAAGGTTCATGAAGAAGAAAAAGGACTACATGTGTTGGATAATGAAGGCCAAGGAGTAATTCATTTGGCAGCTTCTCTTGGTTATGTGTGGGCTTTGGGCCCATTAGTTGGTGCGGGTATCAGTCCTAACTTCAGAGATGCACATGGAAGAACAGGACTTCACTGGGCATCATACTTTGGGAGAGAAGAAACTGTGATTGCGCTAGTCAAATTAGGTGCAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCGAGGAAAAACAGCAGCTGACTTAGCTTCAAGAAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGGTAGATCTAACAAGTCAGTTATCTATATTGACTGTAAATGAAAATGAGATGTACAGCATTGCCACAACCACAGCAGCTGACAGTGCTTTTGAGGCTGCTGAAGGTGACTCATCTAATATGACAATGGATGAGCAACACTGTCTAAAGGAGTCACTTGCTGCTTTTCGAAAATCAGCTCATGCAGCTGCTTCGATCCAAGCAGTCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAGGCAGCAGTGATATTTCTGAAACAGTACATGACCTAGTTGCTGATTCTTTGAACAAGGTTCAGAAGATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAGATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAATACGCAATCGCATAGTAAAAATTCAGGCTCATTTTAGAGGGCACCGAGTTCGGAAGCAGTACAAAAAAGTTGTCTGGTCTGTTAGCATTGTGGAAAAGGCAATACTGCGTTGGAGAAGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTGGGCAACCTGTTGGCATTGTGCCAAAAGATGCTGAGAAAAGTGACGAGTATGATTTTCTTAGCATTGGGCGGAGACAGAAATCAGATGATGTAAAAAAAGCTCTGGATAGAGTTAAGTCCATGGTTCGTAACCCAGAGGCGCGGGATCAATATATGAGGCTCATCAAGAAGTATCAGAATTTTAAGGTGGCTTTCAAGTATTTCGGTCCCATGAAGTAG 2979 0.4152 MAETKNYIRNQQLELEKILQEAEHRWLRPAEICEILRNYWKFELTADPPVRPPAGSLFLFDRKSLRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEKLEHIVLVHYREIKEGCKSGISHLPVVPVTLVGSSRSSSAPSSTKTNSPIPVVQTSLRSSAYKVDQNKDVNSHNDPRASSHPQPISNSIPHSAPQLAHEATGFSELLRNPVISSWTSSLPTFSLGTGLSPWALIQNSSRNTVNMYDKELHVEGSIEGPEANFSVHKLSDARLDAVRGMQDGINFRDKLITDMYIQPVTRVSQTVNQVQKEHDLGSFLTQFHDHTDHPVVATTTILVEDDGNDKGESEHVESGGLKKLDSFGRWMDKEIGGDCDNSLMASDSGIYWGTLDAHNEDKEVSSLHHMQLDMDSLGPSLSQEQLFSIHDFSPDWAYAGIRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLTENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHENPTKFISSVGIKVSPEDEVQLQLRLLKLVELGPDKKWLKCSVPECERCKLKGTMYSMKDDSGVFEETFQIDRSEQINPRDVLFQRLIRDKIYEWLVFKVHEEEKGLHVLDNEGQGVIHLAASLGYVWALGPLVGAGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSAFPRGKTAADLASRRGHKGIAGYLAEVDLTSQLSILTVNENEMYSIATTTAADSAFEAAEGDSSNMTMDEQHCLKESLAAFRKSAHAAASIQAVFRARSFCQRQLAKGSSDISETVHDLVADSLNKVQKMGHFEDYLHFAALRIQKRYRGWKGRKDFLKIRNRIVKIQAHFRGHRVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIVPKDAEKSDEYDFLSIGRRQKSDDVKKALDRVKSMVRNPEARDQYMRLIKKYQNFKVAFKYFGPMK 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00073 992 SUPERFAMILY Ankyrin repeat 633 738 IPR036770 -
Sebi285g00073 992 Pfam IPT/TIG domain 444 529 IPR002909 -
Sebi285g00073 992 CDD IPT 443 531 - -
Sebi285g00073 992 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Sebi285g00073 992 Pfam IQ calmodulin-binding motif 874 892 IPR000048 GO:0005515
Sebi285g00073 992 Pfam IQ calmodulin-binding motif 851 868 IPR000048 GO:0005515
Sebi285g00073 992 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Sebi285g00073 992 SUPERFAMILY E set domains 444 529 IPR014756 -
Sebi285g00073 992 FunFam Calmodulin-binding transcription activator 2 847 895 - -
Sebi285g00073 992 Gene3D - 846 895 - -
Sebi285g00073 992 SMART CG_1_2 18 136 IPR005559 GO:0003677
Sebi285g00073 992 MobiDBLite consensus disorder prediction 155 174 - -
Sebi285g00073 992 ProSiteProfiles IQ motif profile. 848 877 IPR000048 GO:0005515
Sebi285g00073 992 MobiDBLite consensus disorder prediction 198 216 - -
Sebi285g00073 992 Coils Coil 1 21 - -
Sebi285g00073 992 SMART ANK_2a 676 705 IPR002110 GO:0005515
Sebi285g00073 992 SMART ANK_2a 715 746 IPR002110 GO:0005515
Sebi285g00073 992 Gene3D Immunoglobulins 437 535 IPR013783 -
Sebi285g00073 992 SMART iq_5 794 818 IPR000048 GO:0005515
Sebi285g00073 992 SMART iq_5 847 869 IPR000048 GO:0005515
Sebi285g00073 992 SMART iq_5 870 892 IPR000048 GO:0005515
Sebi285g00073 992 Gene3D - 619 741 IPR036770 -
Sebi285g00073 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 898 IPR027417 -
Sebi285g00073 992 MobiDBLite consensus disorder prediction 189 216 - -
Sebi285g00073 992 FunFam Calmodulin-binding transcription activator 2 437 534 - -
Sebi285g00073 992 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 981 - -
Sebi285g00073 992 ProSiteProfiles IQ motif profile. 871 899 IPR000048 GO:0005515
Sebi285g00073 992 ProSiteProfiles Ankyrin repeat region circular profile. 676 701 - -
Sebi285g00073 992 ProSiteProfiles Ankyrin repeat profile. 676 708 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00073 Sebi-Chr285 850441 858405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00073 376 982 CAMTA Transcription Factor Family AT5G64220 43.499 1.05e-159 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi285g00073 CG-1 8.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00073 K21596 - gmx:100818336 1579.69