Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00066 ATGGGTGTGATTGTGCTACTGGCTGCTGTTCTTATTGCAGCAGCAACTCAAACTCAAACACAATCCTTGCCAAAGCCAAAGCCAAAGCCAGAGTGCCCAACAATAACAAAGTGTGGCTCCGTCAACATTCCGTTCCCATTTGGGCTAACCGAGGATTGTTCCCTAGACAGTTCTTTCGTAATCAGTTGCAACCAAACCTCTTCACCACACACACCTTTCTTGCCTACAAACAATCTAACTGTCCTAGACATCTCACTCAACGGCGAATTACGCGTTGCGTGGCCAGTAGCCAGCGATTGCTACGGTAATAATGGCACACTGGTGAGTGAAACGCCTCAATTCTTTGACCTCATGACGCCTCCTAATCCTAATCCTACTTTTCATTTATCGTCAACTCGAAACAAGTTGATGGTGGTTGGGTGTGACACCTTTGGACTAGTGCTTGGATACGATGCAGAGGAGAAGAACTACACCACTGGATGCATGTCTCTCTGCAACAGGCTCGATGACATCGTAGCCAATGGATCTTGCTCTGGCGTTGGTTGTTGCCAGACTTCAATACCCCAAAGGCTATCCAGTATGACGTATTCTTCTTTCTCCTTGGATAACCACACAAATGTGATTGCCTTCAATCCATGCGGTTACACTTTTCTGGTCGAAGATGGAGCCTACAATTTCACCTCCACAGATCTCGTCAGGTTTGAGACGACGGCGTTTCCTGTGGTGGTGGATTGGGCGGTGGGGAACCAAACATGCCGAGAAGCTAAGAAGGAGGCATCGAGTTATGCGTGTAAAGCTGACAGCAGTGAGTGTCACGATTCCCCTGAGGGAAAGGGAACTGGTTATCTTTGCAATTGCTCTGCTGGTTTTCAGGGGAACCCTTACCTCCTCAATGGCTGCCAAGATGTTGATGAATGCATGAAATCCAACAACTGCATTCCTGGAGCGATATGCAGCAACTTCCCTGGGGCCTACAATTGTTCATGCCCACAAGGATATAAAGAAGGATATGAAGGAGACGACAAAAGATGCATTCCTATATCTAATACCAATTCCAACAGAGAGATCATTCTCATAATTGCTTTGAGTGTGAGTGTAAGCATCATAGCAATACTCGTAGCAAGCTTTTATGTGTATCGCACAATGAAGAAAAGAAAGCTCATCAAACTTAAACAACAATTTTTTCATCAAAATGGTGGTCTATTGTTACAACAACAGATAGCCAGGCATAGAGGGTCAGCTGAAATGGCTAAAGTCTTCACTATAGAGGAGCTAAAGGAGGCTACCAATAACTTTGATGAAGGCAGGGTACTAGGCCAAGGTGGACAAGGAACAGTTTACAAAGGACTACTAGTAGATAACAGGATTGTAGCAATAAAAAAATCCAGAATCGGTGACCCAAAACAGATCGAGCAGTTCATCAATGAGGTGATCTTGCTTTCCCAAATCAACCATAGGAATGTGGTGAAGCTCTTAGGTTGTTGTTTAGAGACAGAATTTCCCTTGCTTGTTTATGAATTCATTCCCAATGTGCATTTTGTTTCTTCAATGAAAGAGGGTCGGTTACTTGACATTGTCGACAAGGACATAATAGATGAGGCAAATGTTGAGCAACTGATGGTAGTTGCCAATATTGCAAAGATGTGTTTAAGGGTGAATGGAGAGGAAAGACCTACTATGAAAGAAGTGGCAATGGAACTTGAGGGAATGATGGGTATGGAAAAGCATCGATGGGAAAGTGTCAATTTGTCTTCAGAAGAGGCTGAAAACTTGCTCAAAGCAACAGTACCAGCTATTTTCAATGTTGAAGATGGTACTGTTAGTGGAAGTGGCATTAGTTCTTCTGGCTTTGATAGCTTAAATCATATTTCCATGTCATTAGGTGGTGGAAGGTGA 1896 0.4378 MGVIVLLAAVLIAAATQTQTQSLPKPKPKPECPTITKCGSVNIPFPFGLTEDCSLDSSFVISCNQTSSPHTPFLPTNNLTVLDISLNGELRVAWPVASDCYGNNGTLVSETPQFFDLMTPPNPNPTFHLSSTRNKLMVVGCDTFGLVLGYDAEEKNYTTGCMSLCNRLDDIVANGSCSGVGCCQTSIPQRLSSMTYSSFSLDNHTNVIAFNPCGYTFLVEDGAYNFTSTDLVRFETTAFPVVVDWAVGNQTCREAKKEASSYACKADSSECHDSPEGKGTGYLCNCSAGFQGNPYLLNGCQDVDECMKSNNCIPGAICSNFPGAYNCSCPQGYKEGYEGDDKRCIPISNTNSNREIILIIALSVSVSIIAILVASFYVYRTMKKRKLIKLKQQFFHQNGGLLLQQQIARHRGSAEMAKVFTIEELKEATNNFDEGRVLGQGGQGTVYKGLLVDNRIVAIKKSRIGDPKQIEQFINEVILLSQINHRNVVKLLGCCLETEFPLLVYEFIPNVHFVSSMKEGRLLDIVDKDIIDEANVEQLMVVANIAKMCLRVNGEERPTMKEVAMELEGMMGMEKHRWESVNLSSEEAENLLKATVPAIFNVEDGTVSGSGISSSGFDSLNHISMSLGGGR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00066 631 ProSiteProfiles Protein kinase domain profile. 432 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi285g00066 631 Pfam Calcium-binding EGF domain 302 344 IPR001881 GO:0005509
Sebi285g00066 631 CDD EGF_CA 302 333 - -
Sebi285g00066 631 Pfam Wall-associated receptor kinase galacturonan-binding 32 92 IPR025287 GO:0030247
Sebi285g00066 631 SMART egfca_6 302 345 IPR001881 GO:0005509
Sebi285g00066 631 Gene3D Laminin 262 338 - -
Sebi285g00066 631 FunFam Wall-associated receptor kinase 2 402 507 - -
Sebi285g00066 631 SMART egf_5 305 345 IPR000742 -
Sebi285g00066 631 SMART egf_5 251 301 IPR000742 -
Sebi285g00066 631 SUPERFAMILY Protein kinase-like (PK-like) 416 523 IPR011009 -
Sebi285g00066 631 FunFam Fibrillin 2 297 345 - -
Sebi285g00066 631 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 512 571 IPR045274 GO:0007166
Sebi285g00066 631 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 318 329 IPR000152 -
Sebi285g00066 631 Gene3D Transferase(Phosphotransferase) domain 1 504 591 - -
Sebi285g00066 631 SUPERFAMILY EGF/Laminin 300 349 - -
Sebi285g00066 631 ProSitePatterns Calcium-binding EGF-like domain signature. 302 327 IPR018097 GO:0005509
Sebi285g00066 631 Gene3D Phosphorylase Kinase; domain 1 404 503 - -
Sebi285g00066 631 ProSiteProfiles EGF-like domain profile. 302 345 IPR000742 -
Sebi285g00066 631 Pfam Protein tyrosine and serine/threonine kinase 435 519 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00066 Sebi-Chr285 755094 758260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00066 512 631 Receptor kinase-like Gene Family AT1G21230 37.398 2.43e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi285g00066 PK_Tyr_Ser-Thr 9.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00066 - - gmx:100798027 664.455