Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00053 ATGGCTGGGGATATCAGTTTGGATGGAGATGTTGCGAGTCTTCAACCAGATGTAGATCCTGAGAGCAACCAAGATTCAAAGAAGAGCAAGTCAAAAAATGAAGCCACTAACTCAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGAGCTACTGGGAATGGAATCTCCATGCCCTTGATGCTTTTAATATTTGGAAATATGATTAATGCATTTGGATCCAAAGACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTATCTCTGAAATTTGTATACTTGGCTCTGGGTACCTTTGTTGCAGCACTTTTTCAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTTCAAGAATTAGAGGCTTATATCTTCAAACAATTTTGAGGCAAGATGTGACTTTCTTTGATAAGGAAACTAGTACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTGGGACAATTCATACAGTTTCTGGCAACTTTCTTCGGAGGTTTTATCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGTCTGGTGCTATGTTGAGCTTGTCTATTACAAAAGCATCAGCCAAGGGACAAGTAGCTTATTCTACGGCTGCAAGTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCGAGCTTTAACTAAATATAATCAGTCCTTGATCAAAGCTTACAAGACTGGAGTGCAAGAGGCGCTAGCTTCTGGTTTGGGGTTCAGTGCAGTTTTTTTTGTTTTTTACGCCAGTTTTGGTTTGGCTGTATGGTTTGGAGCAAAACTGATAATAGAGAAAGGATATAATGGAGGGGATGTTGTGACTATAATTTTTTCAGTATTGCTTGGTTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCTGAAACTTGATGATATTCGTGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGCTTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCCTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGCTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATCGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAGATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACTTGCTAATGCTGCAAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCCGGGGGCCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCCAGAATCCTGCTTCTGGATGAAGCTACGAGTGCCCTTGACGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGCCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACTATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAACTCACCAAGGATCCTGATGGAACCTATAGCCAACTCATTAGACTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCAAATGACACAGACAAGCCAGAAAGTATAATACATTCTGGAAGACAATCAAGTCAAAGATCTTTTTCCTTACGATCTATAAGCCGAGGTTCATCTGGAGTTGGAAACAGTAGTCGTCACTCATTCTCAGCATCATATGTTGTACCAACAACAGGTGGAGAACTTGAAGCTCCTCCATCAACAGTTCCTTCACCACCACCAGATGTGTCACTTTATCGCTTGGCTTCTTTAAACAAGCCTGAGATTCTAGTCTTACTAATGGGGACTATAGCTGCAGTATTACATGGAGTAATAACACCAATTTTTGGGCTCTTACTTTCCAAAATGATTAGTATTTTCTATGAGCCTGCACATGAGCTTCGTCATGATTCAAAAGTTTGGGCAATAGTATTTGTTGCGCTTGGTGTAGCGGCATTACTCATTATTCCATGTAGATTCTACTTTTTTGGCGTTGCTGGTGGTAAATTGATTAAAAGGATCAGGAACATGTGTTTCGAGAAAGTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTTTCTACTGATGCAGCTTCTATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTTGTTCAAAACATTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCTAGCTGGCAGCTAGCTTTTATAATCCTTGCTTTGGCTCCTCTATTAGGACTAAATGGATATTTACAATTAAAGCTCTTGAAAGGGTTCAGCGCAGATGCAAAGAAAATGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAGCTATACCAGGAAAAATTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAAACAACAATGACAGATGTTTTCCGTGTCTTTTTTGCTCTGAGCATGGCAGCTATGGGAATCTCTCATTCTGGGTCCTTGGTCCCTGATTCATCAAATGCAAAAGGTGCTGCTGCTTCCATATTTGCTATTCTTGATCGGAAGTCACTAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGCTTAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATTCAAAGGCTACAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCTGTCCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGAAGGAGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACCAGTTCATTAGTAGTCTGCAAAAGTTACTTAGACAACATATCAATGCACATAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGAGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAATATTACTACTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGCATGGGGTCATAGCAGAGAAGGGAAAGCATGAAGCATTACTCCATAAGGGAGGTCACTATGCTTCCTTAGTAGCGCTGCACACTAGTGCTTCTTCATTGTAG 3756 0.4153 MAGDISLDGDVASLQPDVDPESNQDSKKSKSKNEATNSVPLYKLFSFADPLDHLLMFVGTVGATGNGISMPLMLLIFGNMINAFGSKDSKEVVDEVSKVSLKFVYLALGTFVAALFQLTCWMITGERQASRIRGLYLQTILRQDVTFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGQFIQFLATFFGGFIIAFIKGWLLTVVMLSCIPLLVLSGAMLSLSITKASAKGQVAYSTAASVVEQTIGSIRTVASFTGEKRALTKYNQSLIKAYKTGVQEALASGLGFSAVFFVFYASFGLAVWFGAKLIIEKGYNGGDVVTIIFSVLLGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGLKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIKAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTAIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTKDPDGTYSQLIRLQEMKGSEQNVANDTDKPESIIHSGRQSSQRSFSLRSISRGSSGVGNSSRHSFSASYVVPTTGGELEAPPSTVPSPPPDVSLYRLASLNKPEILVLLMGTIAAVLHGVITPIFGLLLSKMISIFYEPAHELRHDSKVWAIVFVALGVAALLIIPCRFYFFGVAGGKLIKRIRNMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASIRALVGDALGLLVQNIATAIAGLVIAFEASWQLAFIILALAPLLGLNGYLQLKLLKGFSADAKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKFYACSFYAGARLVEDGKTTMTDVFRVFFALSMAAMGISHSGSLVPDSSNAKGAAASIFAILDRKSLIDPSDESGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGDATEAEIIAAAELANAHQFISSLQKLLRQHINAHRGARSSIIWGTEATSGNCTSYSEESKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKHGVIAEKGKHEALLHKGGHYASLVALHTSASSL 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00053 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Sebi285g00053 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1244 IPR027417 -
Sebi285g00053 1251 MobiDBLite consensus disorder prediction 1 34 - -
Sebi285g00053 1251 FunFam ABC transporter B family member 1 368 617 - -
Sebi285g00053 1251 FunFam ABC transporter B family member 1 690 922 - -
Sebi285g00053 1251 MobiDBLite consensus disorder prediction 621 666 - -
Sebi285g00053 1251 SUPERFAMILY ABC transporter transmembrane region 698 988 IPR036640 GO:0005524|GO:0016020
Sebi285g00053 1251 SMART AAA_5 405 577 IPR003593 GO:0016887
Sebi285g00053 1251 SMART AAA_5 1031 1227 IPR003593 GO:0016887
Sebi285g00053 1251 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00053 1251 Pfam ABC transporter transmembrane region 710 920 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00053 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Sebi285g00053 1251 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Sebi285g00053 1251 FunFam Multidrug resistance protein 1A 994 1246 - -
Sebi285g00053 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 921 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00053 1251 FunFam ABC transporter B family member 9 971 993 - -
Sebi285g00053 1251 PANTHER ABC TRANSPORTER B FAMILY 21 619 IPR039421 -
Sebi285g00053 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 987 - -
Sebi285g00053 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1244 IPR003439 GO:0005524
Sebi285g00053 1251 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Sebi285g00053 1251 SUPERFAMILY ABC transporter transmembrane region 43 362 IPR036640 GO:0005524|GO:0016020
Sebi285g00053 1251 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Sebi285g00053 1251 Pfam ABC transporter 1024 1175 IPR003439 GO:0005524
Sebi285g00053 1251 Gene3D - 994 1131 IPR027417 -
Sebi285g00053 1251 Gene3D - 368 617 IPR027417 -
Sebi285g00053 1251 Gene3D - 1166 1246 IPR027417 -
Sebi285g00053 1251 Gene3D ABC transporter type 1, transmembrane domain 43 624 IPR036640 GO:0005524|GO:0016020
Sebi285g00053 1251 Gene3D ABC transporter type 1, transmembrane domain 922 993 IPR036640 GO:0005524|GO:0016020
Sebi285g00053 1251 Gene3D ABC transporter type 1, transmembrane domain 692 920 IPR036640 GO:0005524|GO:0016020
Sebi285g00053 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Sebi285g00053 1251 FunFam ABC transporter B family member 9 43 374 - -
Sebi285g00053 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00053 Sebi-Chr285 627456 632825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00053 13 622 Calmodulin-binding Proteins AT2G36910 37.480 6.16e-115 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00053 K05658 - gmx:100800293 1876.68