Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00052 ATGGAAGGGGATATCAGTTTGGATGAAGATGCTACCAGTCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGATTCAAAGACAAGCAAGGCCAAAGAAGAAACCACCAAAACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGTAATGGAATCTCCATGCCCTTGATGACTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGCGGAGTTGACTTGCTGGATGATCACTGGGGAGAGGCAAGCTGCTAGAATTAGAGGCTTATACCTTCAAACAATTTTGAGGCAAGATGTGAGCTTTTTTGATAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAATTAATGGCAACTTTCTTTGGAGGTTTTGTCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGTCTGGAGCTATGATGAGCATGGTTATTACAAAAGCATCATCTAGTGGACAAGCAGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAAACAATTGGTTCTATCAGAACTGTTGCATCCTTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAGTCCTTAATTAAAGCTTACAAGACTGTAGTGCAAGAGGCAATAGCTTCTGGTTTGGGATTTGGTTCACTCTATTTTGTTGTTATTTCCAGTTATGGTTTAGCCATATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAAGTTGTGACTGTGATTTTTGCTGTATTGACTGGCTCCATGTCTCTTGGGCAAGCATCTCCAAGTTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAACTTGATGATATTCGTGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGATTTTCTCTTTCAATACCAAGTGGTGCTACTGCAGCCTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACTGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACAGATGAAGAAATTAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGTGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCTAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAAGGGTCAGAACAGAAAGTTGTAAATGACACAGAGAAGCCAGAAAGTATAACACTTTCTGGAAGACAATCAAGTCAAAGATCATTTTCCTTAAGATCTATAAGCCATGAGTCATCTGGAGTTGGAAACAGTGGTCGTCTCTCATTCTCAGCATCATATGGTGTGCCCACAACAGTTGGCATTTTGGAACCTACAAGTGAAGCTCCTCCTTCAACAGCTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAATAAGCCAGAGATTCCAGTCTTACTGATAGGCACTATAGCTGCAGTGGCACATGGAGTGATCTTACCCATTTTTGGGCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTGATGAACTTCGTGACGATTCAAGGGTTTGGGCATTAGTATTTGTTGGCTTGCTGTGGCATCTTTACTCATTTTTCCATAAATTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCTATTAGAGCTTTAGTTGGGGATGCACTTGGTTTGCTAGTTGAAAATATTGCTACAGCAATAGCTGGATTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTATTAGGACTAAATGGATATTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCGCTGATTCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAGGAAAAATGTGAGGGACCAATTAAGACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGTTCATCATTCTTTGTGCTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAATCATCATTCTCAGATGTTTTCCGTGTCTTTTTTGCTCTTAGCATGGCAGCTATAGGAATGTCTCAATCTGGGACCTTGGTTCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATCGGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGTTTAAGCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTAACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTAATACAAAGATTTTATAATCCAGACTCAGGTAACATTACACTGGAAGGAATAGAAATCCAAAGGCTGCAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTTAATGAAACCATCAGAGCCAACATTGCATATGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTAGCAAATGCTCACAAGTTCATTAGTAGTTTGCAAAAGGGTTATGACACAATAGTAGGGGAACGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTAGACCGAACCACAATAGTTGTGGCTCATAGATTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTCATTGCAGAAAAAGGAAAGCATGAAGCATTACTCCGTAAGGGAGGTGACTATGCTTCCTTAGTAGCATTGCACACAAGTGCTTCTTCATCTTAG 3750 0.4083 MEGDISLDEDATSLQPVVDPDSKQDSKTSKAKEETTKTVPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNTKEVVDEVSKVSLKFVYLAAELTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFFGGFVIAFIKGWLLTVVMLSCIPLLVLSGAMMSMVITKASSSGQAAYSTAASVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYKTVVQEAIASGLGFGSLYFVVISSYGLAIWFGGKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGATAALVGQSGSGKSTVVSLIERFYDPLAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTRDPDGAYSQLIRLQEMKGSEQKVVNDTEKPESITLSGRQSSQRSFSLRSISHESSGVGNSGRLSFSASYGVPTTVGILEPTSEAPPSTASSPPEVPLYRLAYLNKPEIPVLLIGTIAAVAHGVILPIFGLLLSKMISIFYEPADELRDDSRVWALVFVGLLWHLYSFFHKLVHMEVSWFDEAEHSSGALGARLSTDAASIRALVGDALGLLVENIATAIAGLVIAFVASWQLALVILALVPLLGLNGYLQVKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRRGIISGIGFGSSFFVLYAVYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGMSQSGTLVPDSTKAKSAAASIFAILDRKSQIDPSDESGMTLEEVKGEIEFKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLIQRFYNPDSGNITLEGIEIQRLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKGGDYASLVALHTSASSS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00052 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00052 1249 FunFam ABC transporter B family member 9 43 367 - -
Sebi285g00052 1249 Gene3D ABC transporter type 1, transmembrane domain 58 393 IPR036640 GO:0005524|GO:0016020
Sebi285g00052 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 609 IPR027417 -
Sebi285g00052 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 988 - -
Sebi285g00052 1249 FunFam Uncharacterized protein 969 995 - -
Sebi285g00052 1249 SUPERFAMILY ABC transporter transmembrane region 43 355 IPR036640 GO:0005524|GO:0016020
Sebi285g00052 1249 SUPERFAMILY ABC transporter transmembrane region 694 989 IPR036640 GO:0005524|GO:0016020
Sebi285g00052 1249 FunFam ABC transporter B family member 1 759 968 - -
Sebi285g00052 1249 SMART AAA_5 1032 1225 IPR003593 GO:0016887
Sebi285g00052 1249 SMART AAA_5 398 584 IPR003593 GO:0016887
Sebi285g00052 1249 Pfam ABC transporter transmembrane region 56 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00052 1249 Pfam ABC transporter transmembrane region 761 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00052 1249 PANTHER ABC TRANSPORTER B FAMILY 20 755 IPR039421 -
Sebi285g00052 1249 MobiDBLite consensus disorder prediction 623 655 - -
Sebi285g00052 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Sebi285g00052 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 762 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi285g00052 1249 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Sebi285g00052 1249 Gene3D - 995 1248 IPR027417 -
Sebi285g00052 1249 FunFam ABC transporter B family member 1 995 1244 - -
Sebi285g00052 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 332 - -
Sebi285g00052 1249 Gene3D - 394 618 IPR027417 -
Sebi285g00052 1249 MobiDBLite consensus disorder prediction 1 32 - -
Sebi285g00052 1249 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Sebi285g00052 1249 MobiDBLite consensus disorder prediction 613 655 - -
Sebi285g00052 1249 Gene3D ABC transporter type 1, transmembrane domain 669 993 IPR036640 GO:0005524|GO:0016020
Sebi285g00052 1249 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Sebi285g00052 1249 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Sebi285g00052 1249 CDD ABC_MTABC3_MDL1_MDL2 1005 1240 - -
Sebi285g00052 1249 FunFam ABC transporter B family member 1 361 610 - -
Sebi285g00052 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1242 IPR027417 -
Sebi285g00052 1249 Pfam ABC transporter 390 538 IPR003439 GO:0005524
Sebi285g00052 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1242 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00052 Sebi-Chr285 601087 606393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00052 708 1246 Calmodulin-binding Proteins AT2G36910 40.564 2.71e-128 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00052 K05658 - gmx:100800293 1974.13