Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00047 ATGGAACCGGATGACTGGGGATTGAGCGCTGAGGACTTTGATTCCCTCGAACGAGACGCTTTCCAGAAGATTGCTCAACTACGCCATTCTTCTTCTCAGCAACAACACCATTCTACAACCAACCGCTTGGAACAATTCCCACCAAACCCCCTTCCCGATTCACGTCCACAAAGAGTTGATGCTTTGTCTCAAGGAGCCAGAGCAGTAGCACTACCCACGTCCACGTCATTGAAACCAGGGACAACAACAAACAAAGATGAACATCCGAAAGAAGTGCCAAAGATTTCTGTCAAATTTTTTCTCCATTCTAGTGGAAGTGTTGCGGCAAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGGAGAATTCCTAAATCTTCCTGGAATGCAAAAGAACGGTTATGGGTGTTTCCACTGTCTTCTTTGTCAGAAGCAGAAAAGATTCTTGGAGAAGTATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAGCGGGCAGTTGCTGCTGCCTCCAGTGTTCCAGATCTTCGAGATCGATATGACAATATCCCTAGCGATATTGAATCAAAGCTTATGCCATTTCAGCGAGAAGGTGTTAGGTTTCTATTGCAGCATGGATGTCGTGCTCTTTTAGCAGATGAAATGGGACTGGGGAAAACTTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGATTCATGGCCTGTTCTCATACTTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAACATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTCTCTTCAAATGCTAAAAGTGGCATTCATCTGGATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCATGGCTTCCGACTTTAAGGTTGTAATTGCTGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCATTATCGCGACCAATTGAACTATTTAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAGTATGGGAATCGGTATTGCAAGGGTGGAATTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACGGTGATGATTCGAAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTATTCCTAGACTTGGCTGAAAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCATCTAACTCAAAAGAGGAGGTTGAATCGCTCAAGTTTACTCAAAAGAATCTGATTAACAAGATATATACTGATTCTGCCGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGGACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAACCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGTATTGATGGAAGCACACCTGCTGCATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCAATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCAGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTAGATGGCCATGAGAAAACCTTAGAGGTCTCATCTAGTCGGCCAGGGAATAGCCCTGCAAAGCGGAAAACTGTTGAACAGTGTCAACCAGGGAATAGCCCTGCAAAGCAGAAGACTCTTGACCAGTTTGTTAGAAGATGTGACAACATGGATGCGTTGGAACATCAGTCCAATCCCAAACGTCCCCGGCACTGA 2109 0.4244 MEPDDWGLSAEDFDSLERDAFQKIAQLRHSSSQQQHHSTTNRLEQFPPNPLPDSRPQRVDALSQGARAVALPTSTSLKPGTTTNKDEHPKEVPKISVKFFLHSSGSVAAKFQYDQVVVAAFRRIPKSSWNAKERLWVFPLSSLSEAEKILGEVSGYNVQVENLDPLVQRAVAAASSVPDLRDRYDNIPSDIESKLMPFQREGVRFLLQHGCRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSNAKSGIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLAEKDMKQINALFRELERVKAKIKASNSKEEVESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKTLEVSSSRPGNSPAKRKTVEQCQPGNSPAKQKTLDQFVRRCDNMDALEHQSNPKRPRH 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00047 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 376 IPR014001 -
Sebi285g00047 702 SMART ultradead3 191 384 IPR014001 -
Sebi285g00047 702 Pfam SNF2-related domain 208 470 IPR000330 GO:0005524|GO:0140658
Sebi285g00047 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 649 IPR027417 -
Sebi285g00047 702 CDD DEXHc_HARP_SMARCAL1 195 418 - -
Sebi285g00047 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 647 IPR001650 -
Sebi285g00047 702 MobiDBLite consensus disorder prediction 27 62 - -
Sebi285g00047 702 SMART helicmild6 521 604 IPR001650 -
Sebi285g00047 702 MobiDBLite consensus disorder prediction 27 47 - -
Sebi285g00047 702 Pfam Helicase conserved C-terminal domain 505 604 IPR001650 -
Sebi285g00047 702 MobiDBLite consensus disorder prediction 648 677 - -
Sebi285g00047 702 Gene3D - 438 692 IPR027417 -
Sebi285g00047 702 CDD SF2_C_SNF 491 615 - -
Sebi285g00047 702 Gene3D - 170 424 IPR038718 -
Sebi285g00047 702 MobiDBLite consensus disorder prediction 645 678 - -
Sebi285g00047 702 Coils Coil 437 467 - -
Sebi285g00047 702 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 694 - -
Sebi285g00047 702 FunFam Chromatin remodeling factor18 453 698 - -
Sebi285g00047 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 418 IPR027417 -
Sebi285g00047 702 ProSiteProfiles HARP domain profile. 91 165 IPR010003 -
Sebi285g00047 702 FunFam Chromatin remodeling factor18 168 442 - -
Sebi285g00047 702 Coils Coil 702 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00047 Sebi-Chr285 546814 562467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00047 475 624 RAD5 or RAD16-like Gene Family AT1G05120 30.519 8.12e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi285g00047 SNF2_N 9.2e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00047 K14440 - gmx:100778246 1161.36