Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00026 ATGGCTCTCTCTACCACAAAAAAGCCATTGAGAAGAACACCTACTATCACATTCATCCTCTTGCTGGTATTATGCACCAGCACCACCCCATCCTCGGGTGCTGCTCACACTGATTTCTTGGGATCAGCCTGCCTCAAAGTTTCTCCCGCCAAATTTGTCAACTCTATCAGTGAAGTTGTTGGTGTTATACGAACGGTTTCATCCATTTTGTCACGCTTCAGCAGTGGCTTCGGCAACTTTCATCTCTCAAACGCCATTATCGACTGTCTCGATTTGCTTGACTTGTCCTCTGACGCGCTTTCCTGGTCTGTCTCCGCTACTCAGAGTCCCAAAGGGAAGCATAACAGTACGGGGGACCTAAGTTCTGATTTGAGGACGTGGCTGAGTTCTGTACTTGCGAATCCAGAAACGTGCATGGAGGGATTTGAAGGTACAAATAGCATTGTGAAAGGTTTAGTATCAAGTGGTCTTGGCCAAGTGATGTCGTTAGTGAAGGAGATTCTTGTTCAAGTGGTTCCTGCTGCTGCTGCATCGGATCAATTCTCTACCAGCAAGGGTCAATTTCCTTCATGGATTAAACCAAGGGAGAGGAAGCTGTTACAGGCGAATGGAGTCACTGCGGATGCTGTGGTGGCTGCAGATGGAACTGGAAACTACGCTAAGGTGATGGATGCGGTGCTGGCAGCACCTGACTATAGCATGAAACGGTATGTTATATACATAAAGAAAGGTGTTTATGTGGAGAATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGTATGGATGCTACTATTATCACCGGTAATCGGAGCGTTGTTGATGGATGGACCACATTCCGATCAGCTACCTTTGCTGTCAGTGGCAGAGGTTTCATAGCACGGGACATTTCTTTTCAGAACACTGCAGGACCTGAGAAGCACCAAGCAGTAGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATCTTTGGTTACCAAGACAGCTTATATACTCACACTATGCGCCAATTCTTCAGAGAATGCAAAATCAGTGGCACAGTGGATTTCATCTTTGGAGATGCCACTGCTGTGTTCCAAAACTGCAGAATACTAGCTAGGAAAGGCTTGCCAAGTCAAAAGAACACCATCACAGCTCAAGGTAGGAAAGATCAGAATGAACCAACTGGTTTCTCCTTCCAATTCTGTAACATCTCTGCAGATTCTGACCTTCTACCTTCAGTTAGTTCCACTGAAACATACCTTGGAAGACCCTGGAAAACTTATTCAAGAACAGTTTTCATGCAATCATATATGAGTGATGTGATAAGGCCACAGGGGTGGATAGAGTGGAATGGAAATTTTGCTTTGGATACGTTGTACTATGCTGAGTACATGAACTCAGGACAAGGTGCAGGACTAGCTAACCGAGTGAAATGGTCAGGGTACCATGCATTGAATGATTCTAAGCAAGCTAGTAACTTCACGGTGGCTCAATTTATTGAGGGGAATCTATGGTTACCTTCCACAGGTGTAACGTACACTGCTGGATTGACAGTTTAA 1566 0.4515 MALSTTKKPLRRTPTITFILLLVLCTSTTPSSGAAHTDFLGSACLKVSPAKFVNSISEVVGVIRTVSSILSRFSSGFGNFHLSNAIIDCLDLLDLSSDALSWSVSATQSPKGKHNSTGDLSSDLRTWLSSVLANPETCMEGFEGTNSIVKGLVSSGLGQVMSLVKEILVQVVPAAAASDQFSTSKGQFPSWIKPRERKLLQANGVTADAVVAADGTGNYAKVMDAVLAAPDYSMKRYVIYIKKGVYVENVEIKKKKWNIMMIGDGMDATIITGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAVFQNCRILARKGLPSQKNTITAQGRKDQNEPTGFSFQFCNISADSDLLPSVSSTETYLGRPWKTYSRTVFMQSYMSDVIRPQGWIEWNGNFALDTLYYAEYMNSGQGAGLANRVKWSGYHALNDSKQASNFTVAQFIEGNLWLPSTGVTYTAGLTV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00026 521 Pfam Pectinesterase 208 505 IPR000070 GO:0030599|GO:0042545
Sebi285g00026 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 172 IPR035513 -
Sebi285g00026 521 PANTHER PECTINESTERASE 25 509 - -
Sebi285g00026 521 Gene3D - 202 519 IPR012334 -
Sebi285g00026 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 163 IPR035513 -
Sebi285g00026 521 FunFam Pectinesterase 202 519 - -
Sebi285g00026 521 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Sebi285g00026 521 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Sebi285g00026 521 Pfam Plant invertase/pectin methylesterase inhibitor 24 155 IPR006501 GO:0004857
Sebi285g00026 521 CDD PMEI-like_4 15 173 - -
Sebi285g00026 521 SMART PMEI_2 35 170 IPR006501 GO:0004857
Sebi285g00026 521 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00026 Sebi-Chr285 268311 271854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00026 15 519 Carbohydrate Esterase AT3G43270 63.178 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00026 K01051 - gmx:100814987 809.29