Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00006 ATGGGTAAAGTTGAAAGTGGGGCGACTTTTTTGGCTTCACTAACACTCCTCCTCCTCCTCACTCTCCCATCCGCTCGAACCATCTTGGACCAACAGCTCGCCGATGCAATCGTGAGGGTTCGCAAAGACGGACGCGGAGACTTCACCACAGTGACGGAAGCCGTTAACAGCATCCCGTCGGGGAACAAACGGCGAGTGGTGATCTGGATCGGGATAGGAGAGTACCGTGAGAAGATCAGGGTGGATCGTTCGAAGCCTTTCGTGACGTTTTATGGAGAAAAGAACGGGAACGACATCCCCGTTATAACGTACGACGCTACAGCGTTGCAGTATGGGACAGTGGATAGCGCCACCGTCACTGTCGAGTCTGACTACTTTGTGGCTGTCAATGTGGCCTTTGTGGTGGGCGCGACAGTCTACTACGGAGAATATAGGTGCATGGGACCAGGAGCTACTTCCTCTGGCCGTGTCAAATTTCAAAAGCTACTATCTTATGAAGAAGCAAAGCCCTTCTTGAGCATGGCTTATATTCATGGACAAAATTGGGTCCTCCCTCCCCCTAACCTGTGA 570 0.5193 MGKVESGATFLASLTLLLLLTLPSARTILDQQLADAIVRVRKDGRGDFTTVTEAVNSIPSGNKRRVVIWIGIGEYREKIRVDRSKPFVTFYGEKNGNDIPVITYDATALQYGTVDSATVTVESDYFVAVNVAFVVGATVYYGEYRCMGPGATSSGRVKFQKLLSYEEAKPFLSMAYIHGQNWVLPPPNL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00006 189 Pfam Pectinesterase 39 134 IPR000070 GO:0030599|GO:0042545
Sebi285g00006 189 Gene3D - 137 185 IPR012334 -
Sebi285g00006 189 Gene3D - 33 136 IPR012334 -
Sebi285g00006 189 SUPERFAMILY Pectin lyase-like 34 133 IPR011050 -
Sebi285g00006 189 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 138 183 - -
Sebi285g00006 189 SUPERFAMILY Pectin lyase-like 138 183 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00006 Sebi-Chr285 30753 32364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00006 138 189 Carbohydrate Esterase AT5G07410 51.923 1.48e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00006 K01051 - gmx:100790786 161.384