Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi285g00001 ATGGAGATGGTTTTTGTGGATGAAAAGGGCCACAAGATAGGAGCTGTTGTGAAACATGGTGAATTTGAAAAACGAAAAGATCAACTCAAAGAGGGTTGTACTTACATTATGCAAAACTTCGAGGTGGAAGCTAATAGTGGAGAATATAAGGTTTCCAAGCATCCTTTCCAGTTGATTTTTATGAAAGGAACAACGGTTAGAGAGTGTAACCTATCCCAAATTCCTGAACGTGTTTATAAATTCACTAGCTTTGAGGATATTTTGAGCGGGAAGGCTCCTCCTGATGTCTTAGTTGATGTGATAGGTCAATTCGTGGAAATCAAAAGAGAACGAGTTCGTTCTACTTCAAAGAAGATGGTCAATGTGCTACTGAAGGACAATAGGGGAATCACACTCAGTGTTACCCTATGGGACACATATGCTGATCAGTTGTTAAGTTTCTTAGACAACAATGAAGCCGGTCTAATCATCGTAATCCTAACACTAGCAAAGATCAGGGATACAAAAGGACAATATCCAATCAGCATCCAGAACTCTAAATATGGTTCAAAGCTTCTCATTAATGAAGACTCTGAGGAAATCAACCGGTATAAGAGCAGCCTAGAGTCACTTCTAATATGCGACTCACTAAGTCAAGGAATATCTCAAGTTCCTTCATATTCCCAGACTTCTACTGGGGAATGGTTCTTTACAAATACTCAAGTGATGAGCTTGAAGGAAATCAATAAGCTAGATATGGAGACCTATTGTGTGACTGTTGCAAAAATTGATAAATTCTTAGTGGCAAATGGTTGGAGCTATGATGCTTGCATGTATTGCACTAAGGGTGGTGATCCCAAAGAAACACCTTATTTGTGTCCAGGTTGCAAAAAAACAATATCTGAAACAGTCGCAAGATTTCGGTTGGAGGTGCAGGTTTCTCAAGGCAGTGAGGTTGCCAAGTTTGTGTTATGGGATGATGTTTGTGTACAACTTTTAAATGTAACTGCGGCGAAACTTATGCAGTTGATGATAGATAAAGAAGAATTAGACCCAATGGTTGTTCCTGTAACTATTGACTCCATCTTGGGCAGGACACTTGCATTCAACATAAAAGTTCAACCTAAATATAAACGCTCTTCAGTCACAAAAGTTTCAGAGGATGCAGTGATTATGGAATCAATCATTAATAAACTTGCTGTTGATGAGGTTGCAATTACTATTAATAGCGACAACGGGAAGTCTGTCCTGAATGAAGATGACTACTTTGATAGTTTATGTATGTCTGCAACTGCTGATTATGACCCAGATTCACTTGGGAATCAGACTCCAGCCAAGAGGTTGTCATCTGAGGAGCAATTTGATGATCAACACAATCAACATCTCACTACATGTCAACTTTCCACTACTAAGATGAGAAAGAACATCAAAACTGAATGA 1419 0.389 MEMVFVDEKGHKIGAVVKHGEFEKRKDQLKEGCTYIMQNFEVEANSGEYKVSKHPFQLIFMKGTTVRECNLSQIPERVYKFTSFEDILSGKAPPDVLVDVIGQFVEIKRERVRSTSKKMVNVLLKDNRGITLSVTLWDTYADQLLSFLDNNEAGLIIVILTLAKIRDTKGQYPISIQNSKYGSKLLINEDSEEINRYKSSLESLLICDSLSQGISQVPSYSQTSTGEWFFTNTQVMSLKEINKLDMETYCVTVAKIDKFLVANGWSYDACMYCTKGGDPKETPYLCPGCKKTISETVARFRLEVQVSQGSEVAKFVLWDDVCVQLLNVTAAKLMQLMIDKEELDPMVVPVTIDSILGRTLAFNIKVQPKYKRSSVTKVSEDAVIMESIINKLAVDEVAITINSDNGKSVLNEDDYFDSLCMSATADYDPDSLGNQTPAKRLSSEEQFDDQHNQHLTTCQLSTTKMRKNIKTE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi285g00001 472 CDD RPA1_DBD_A_like 1 66 - -
Sebi285g00001 472 Pfam Domain of unknown function DUF223 2 97 IPR003871 -
Sebi285g00001 472 SUPERFAMILY Nucleic acid-binding proteins 2 69 IPR012340 -
Sebi285g00001 472 CDD RPA1_DBD_B_like 99 201 - -
Sebi285g00001 472 Gene3D - 72 204 IPR012340 -
Sebi285g00001 472 Pfam Replication factor-A C terminal domain 254 369 IPR013955 -
Sebi285g00001 472 MobiDBLite consensus disorder prediction 427 451 - -
Sebi285g00001 472 PANTHER OS03G0429900 PROTEIN 4 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi285g00001 472 SUPERFAMILY Nucleic acid-binding proteins 79 202 IPR012340 -
Sebi285g00001 472 SUPERFAMILY Nucleic acid-binding proteins 236 369 IPR012340 -
Sebi285g00001 472 Gene3D - 1 69 IPR012340 -
Sebi285g00001 472 Gene3D - 220 391 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi285g00001 Sebi-Chr285 4622 7007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi285g00001 5 344 Core DNA Replication Machinery Family AT5G08020 23.120 1.16e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi285g00001 - - gmx:102667313 330.102