Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi284g00060 ATGGCTTCATCGATTAGAGTAGACTGTAATTTTCTCTTTGAATTCCTAGTGCCCAACAGGAAGTATGAGAAATTAGCTGACGTGGATGAAGAGTTCATTTCAGAATATTCCAGCCAAGTAGGTGAGTTTTGGACAGTGAAAGATCCTAAAGGACAGTTACATACGATACGCTACAAATACAATCGTCGTTTGGATCGACCTCGGATCATTGGTGGGTGGATGGAACTAAGGGATTTTTATAGCCTTGAGGGAAATTGCTTAGTGTTGTTCCGTTACCTTGGTGGTTCCGAATTCAACATTTACATTCTTGACCACAACAAAAAGCAGATAAGTTACGATTATTCCCCTGCTCCAATCCACCCACCATTTTCATCTTCCTACATTGCTCAATGCGACATCCAATTAACCACTACCATGGTCACCGGATATAAATTGACATTGCCTCCTCAAATTGGTGCATTAGTGAGGAGGTCAGGTTCTCAAAAGTACCACTTGATTGGACCCAGTGGACATAGTATTGGATGTAATGTGTTTGCCCCCCAAAATCAAGGTTCTACAAAGCTTGGAAATGGCTGGAGGAATTTCTGCCGAGTCAATGAAGTTCAGGCTAATGACATTCTTACTTTCAAGTTTACAAGTCTAGAAGATGGAATAGTGCATGTCTTTATTGAGCGTCCTATAGCTTGA 687 0.4119 MASSIRVDCNFLFEFLVPNRKYEKLADVDEEFISEYSSQVGEFWTVKDPKGQLHTIRYKYNRRLDRPRIIGGWMELRDFYSLEGNCLVLFRYLGGSEFNIYILDHNKKQISYDYSPAPIHPPFSSSYIAQCDIQLTTTMVTGYKLTLPPQIGALVRRSGSQKYHLIGPSGHSIGCNVFAPQNQGSTKLGNGWRNFCRVNEVQANDILTFKFTSLEDGIVHVFIERPIA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi284g00060 228 PANTHER B3 DOMAIN-CONTAINING 47 221 - -
Sebi284g00060 228 Pfam B3 DNA binding domain 135 222 IPR003340 GO:0003677
Sebi284g00060 228 CDD B3_DNA 45 104 IPR003340 GO:0003677
Sebi284g00060 228 Gene3D - 9 107 IPR015300 -
Sebi284g00060 228 Gene3D - 131 225 IPR015300 -
Sebi284g00060 228 SUPERFAMILY DNA-binding pseudobarrel domain 133 223 IPR015300 -
Sebi284g00060 228 SUPERFAMILY DNA-binding pseudobarrel domain 28 106 IPR015300 -
Sebi284g00060 228 ProSiteProfiles B3 DNA-binding domain profile. 130 227 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi284g00060 115 211 REM Transcription Factor Family AT2G24690 31.000 3.29e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi284g00060 B3 3.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi284g00060 - K14616 tpra:123900141 88.5817