Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi284g00041 ATGGCAACAAACAGATTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGTCTACAAAAGAGCCAAGGAGAAAGGTGTATCTGTGTCCAGAACCCACATGCGTCCATCACGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCTCAAGAGAGTGCAAGACACCCTAATGGGTTAAACCCTTTAGGGACTCATTTGTATGGCACAAATCACATGAGTTTAGGCCTATCCCAAGTGGGTAACCAAATTTCCCAATTCCAAAATCAGAACCAAACAGCTACTAACAACATGTTGCGCCTTGGCAATGGTGGTGCAACAAAGTTTGAGCACTTAAATATCCCACCTTTAAACCATCAATCTTCATTTGGAGTACAATCATCACCACAATCAATCCCTTCTTCAGCTTTCTTCATAACTGACACAAATCAAGCATTTGAACATCATCAACAATCCCCATTGATCTCAAGCAAGCAACTACATGGTCTAATGCAACTTCCTGATCTCCAAGGTAACCCCAATTCTTCCTCCAATCTCTTCAACCCCAGCTTCTTTCCAAATAGCAGTAACAACACTGACCAATTCAACCAAGGAACATCACTTTATATTAACAACAACCTTGTGAGTAGTAGTGATCAAGTTGTTGGTTCAGGTTTGTCATCACTCTTTGGCAACTCATCTTCATCAGTGCAACATGAAAACATGTCTCCTCATATGTCTGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAAGCACCACCAAAGGTGGTTCCTCTCTACTAATAAGAGGAATGTGTAGTAGTTCATCAACCTACAATGACCCCAAATCTGACACTGAAAGGGACATTGTATCTGCTGATAATATTGTTGCCACTTTTGGAAGTGACCATAGAAGGGGAGAAGGTATAAAATCAACCATGGAAAGTGACCACCACAATCTTCATGGGTTGATGAACTCTATTGCCAATGGGAACACATCCATATTTGGGAATGAAAGCAACCTTGGTCGGTTTCATAATGTGGAAGAATCTAACAATAAGTTGCACCAAAGTCTTAATGTGAGCTTTGGAGGTGGGTCTGATAAGTTGACATTAGATTTCTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAAAGTGAACAACAACGTGTCATGGGTACTATGAGTTCTTTGAATCCTGACCTAAAATCAGCACATTCAAGCCAACATTTTGGAAGCTCAACGATGCAATGA 1512 0.416 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGLNPLGTHLYGTNHMSLGLSQVGNQISQFQNQNQTATNNMLRLGNGGATKFEHLNIPPLNHQSSFGVQSSPQSIPSSAFFITDTNQAFEHHQQSPLISSKQLHGLMQLPDLQGNPNSSSNLFNPSFFPNSSNNTDQFNQGTSLYINNNLVSSSDQVVGSGLSSLFGNSSSSVQHENMSPHMSATALLQKAAQMGSTTSTTKGGSSLLIRGMCSSSSTYNDPKSDTERDIVSADNIVATFGSDHRRGEGIKSTMESDHHNLHGLMNSIANGNTSIFGNESNLGRFHNVEESNNKLHQSLNVSFGGGSDKLTLDFLGVGGMVRNMNGGFSQSEQQRVMGTMSSLNPDLKSAHSSQHFGSSTMQ 503
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi284g00041 503 Gene3D Classic Zinc Finger 2 53 - -
Sebi284g00041 503 MobiDBLite consensus disorder prediction 481 503 - -
Sebi284g00041 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 471 IPR031140 -
Sebi284g00041 503 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sebi284g00041 503 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Sebi284g00041 503 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Sebi284g00041 503 Coils Coil 161 181 - -
Sebi284g00041 503 Gene3D Classic Zinc Finger 60 139 - -
Sebi284g00041 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Sebi284g00041 503 FunFam Zinc finger protein MAGPIE 2 29 - -
Sebi284g00041 503 SMART c2h2final6 6 28 IPR013087 -
Sebi284g00041 503 SMART c2h2final6 82 102 IPR013087 -
Sebi284g00041 503 SMART c2h2final6 47 77 IPR013087 -
Sebi284g00041 503 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi284g00041 Sebi-Chr284 726346 729504 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi284g00041 1 466 C2H2 Transcription Factor Family AT2G02080 47.303 9.78e-115 344
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi284g00041 zf-C2H2_jaz 3e-05 CL0361