Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi284g00022 ATGAATAACTCTGTTTCAGATAACAGTTTTATTATTGAGAGTGATGAAGAAGATGAGGAGAAGGATTTGAACAAAGGTGAAGTTGATGGTAACGATTCTGATTCTTCCAATTACTCAAATGAAAACCCACCACAGAGGAAACCCAGTTCTTACAACATCTCATGGCCTCAGAGTTACAGGTCAACTTCTTCTTCTGCCCCTTGTTTCAATTCCACTGGATTTGTGAAATTTCTTGTTTCTTGCTTCTGTGCGTGCACTCCACGCGCCTGTTACTTCATGTGCCCTTTTTTGCTTTTGTTTCTTGAAGTGTCCAGGGAATCCTCTGAGCAATCTATTGATCTATACAGTAGTGTACCATCACCAAATATTGGATTTCTGGGCACTCCCTCTTTGTCAAGATTAAGCAGTTCTTTCCTTTCTACATCTCTAACAAGGAGGCACACTCCTGAAACACTTCCTTCAGTGACAAAACCTCTCATACAGCCTATAGAAGATGAGCAGCAACAGAGACGTAGCTCTCATGCCTTGCTTCCACCTTCTAGGAAGTCTTCTTTGCTTAAAAAGGATTCCATTTCCAAGATTTCTCATGAAGTTCCTACTCGTCACTGCTCTTATGGACAGGCTGTGCTTAATGGCATAAATGTTCTTTGTGGAGTAGGAATCCTTTCTACCCCTTATGCTGCCAAAGAAGGTGGATGGATTGGGCTCTCTATCTTGTTCATTTTTGGGATTATTTCCTTCTATACTGGGTTGCTCTTGCGTACCTGCTTGGACAGTGAACCTGGTCTTGAGACATACCCTGACATTGGCCAAGCTGCTTTTGGTACTACTGGACGTATTTTCATTTCAATAGTATTGTATGTGGAGTTGTATGGTTGTTGCATTGAATATATAATTTTGGAGGGTGACAACCTCTCTACCTTATTCCCAAATGCATACTTAAATTTGGGTGGAATTGAATTGAATTCACAAACTCTGTTTGCTGTGATTGCCACCTTGGCTGTTCTTCCTACTGTTATGCTCCGTGACCTAAGCGTTCTCAGTTACATCTCAGCTGGTGGGGTTGTTGCATCAGTTTTGGTGATTATCTGCTTGTTCTGGGTTGGCATAGAGGATGTTGGCTTTCATAGCAAAGGGACAACACTCAACCTTGCAACTTTTCCTGTTGCTCTGGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTCCCAAACATTTATACTTCCATGGCAAATCCAAACCAATTCCCTGCAGTGCTCTTAGCATGTTTTGGAATTTGTACCTTGCTGTATGCTGGGGGTGCTGTTATGGGATACAAAATGTTTGGAGAAGCTGTACTCTCTCAGTTCACTCTTAACCTGCCCCAAGAATTGGTGGCATCCAAGATTGCTGTTTGGACTACGGTTGTTAATCCATTTACCAAATATCCTTTATATGTGCCATGTCTGGTGATGTCATTGATTGGATCATTACTTACAATGCTTGTTGTGACTTCTAATTTGGAGTTGGAAATGGCCAGTGGGAGTAAGGTGGATTTGCATAGTTTTGATGAGGGTTTGCAGCCTTTACCAAATGGGACTATTGAAGACACCTTGCAGAGTGAGCTGGAAAGGATATTGCAAGAGCAGCGCAATCAGCAGTTTATCAATCGAGAAAGGGATATTTATAGGAGTGGAAGTGCTCCTCCAACAGTGGAAGGATCATTAAGTGCTTTTGGTAGTCTAAGGAACTCTGATTTCGGATTGATCAATAATAGGAGGAGTAACAATGATGGATTTTTGACTGAAGATGAGATTCGATCACATCCTGCCTATCTTTCATATTATTATTCACATGAGAGCATAAATCCTAGGTTACCCCCACCATTGTTGTCAAAAGAAGATCGACGTGTTGCACAAAGGTTTCAAGTTGGCGGGTCTTCTTCAATTGAGGGATTTGGGGACTGGAGGAAGAATGTGGCCACAAATGGGGATAGTTCATCACTATTTTCGATGCAGCCAGGATTTTCTGTGCAACAGGCAGAGAATGATTTGATGGAACTGAGAAAAGCCAGTGGGCGGAATCTCTCTAGGCAGAGTTCAACTCAGTTGGTTGACAGGCACATGGATGGTTTGGCAAGAATGTCAGGAGCAATGTCAGGAGCTGGTCTTGGTGCGAGGAGGACATGTTATTCTGACATTCTTCAGGAAGGACTTGATCAACCTGCTTCCTTGTCTAGTAACATGTCTCGTCCAGCAAGTTACACTGCATTTGGTGATATCATGGACTCAACTGGCATTGTTGATCGTGAGTCCTTGGAGGGCTTGCGTTCTTCAGCTTCTACCCCGGGTTTGGTTGGACTTCAGAACCATGGTGTAAATGTTTCTCATAGTTTTGCATCTGCTGTGGGTTCTTCTCTGTCAAGGGTGACAACCCCTGAACCACAGGTTTTTGGGAGACCTGTTGGATCTGCTATTCCTCAAATGGGTGGTAAAGCTTTCCCTGTTGAGAAAAGTGGCATTGGCATGGGTACTCAGAATGGTCACTCTTCCAATTTGACTGATCTTACTGATATGGTATCTTCTTTATCAGGGTTAAATTTGTCAGGTGCCAGAGCTTCAGAGCAAGATAGTCTTTTGAAATCTAAGCTACAAAGGGAAGTTGATAATCATCCTGATGTTCTGTTAAGTACACCTAGCAATGTTAATTTGCCGAGACATAATGAGCTTGTAACAGACCTTAATGCATTTAGTTCAAATGATCAAGTCAATCTACTGAAAAAAACTGCTTCTTTTGCTAATCTTCGCTCAAAAGTGCATTCTACTGGAAACCTAACAAGTTTGCCAAGTACAGACTTCACTAGCCATGTTCCTGCTTTGAGGGGTTGCAGAGATGGACAAAGTTTAGATGCACTAGGAAATCAAGTTGGTCCTGATCTTCATTCCACAACTTTGGACCCACGCCTCATCCAATGCTTGCAGCAAAGTTCTGATTACTCAATGCATGGTTTGAGTAGTTCTAGTGATCCTTTTCAGATGAGAAATTTCTCTGATACTTCACATGGAGACTTAGAGGGACTTCGGAAGGCATATCTTGAGACACTTCTTACTCAACAAAAGCAACAGTATGAACTCCCACTTCTGAGAAAATCAGGCCTTCTTAATCAAGGGTTCTTTGGGAGTCAACCATATGGTCTTGGCATGCCATATTCAGGAAAGCAGATTGCAAATTCCTCAGTTCCTTCTCTTGGATCTGGAAATCCGTTGTTTGAGAATGAACGTATATCACGCATAAATTCTATGATGAGAAGTTCAATGGGAGGTTCTGGCAGCTCATGGCATGCTGATATGGGCAATAACATGGAGGCAAGATTTGCTTCATCCTTACTGGATGAGTTCAAGAACAACAAGGCCAGACCTTTTGAACTTTCAGATATTGTTGATCATGTGGTTCAATTCAGTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACAGCTTCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTCTTTGGCAATTATGTTATACAGAAATTTTTTGAACACGGTACAGAAAGTCAGAGAAAGGAATTAGCCAGCCAACTTACAGGTCACGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGGCCTTGGAGGTGGTTGATGTGGATCAGCAGAGTCAAATGGTGTCAGAGCTCAATGGTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAGAATTCAGTTCATTGTCTCATCTTTTTATGGTCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATTCAGGTTAGACCATTGGAGATGGATCAATACGGAAATTATGTTATTCAGCATATCCTGGAGCATGGTAAATCACATGAACGGACTGCTATTATCAGCAAGCTTGCTGGGCAAATTGTTAAGATGAGCCAGCAAAAATTTGCTTCTAATGTTATCGAGAAGTGCTTGACTTTTGGTAGTCCTGAAGAGCGTCAGATTTTGGTGAATGAAATGCTTGGTACCTCTGATGAGAATGAGCCCTTACAGGCTATGATGAAGGACCCTTTTGGAAATTATGTTGTGCAAAAGGTTCTTGAGACTTGTGATGATCAAAGTCTTGAGTTGATCCTTTCTCGCATCAAGGTTCACTTAAATGCCCTGAAGCGGTATACTTATGGCAAACATATCGTTTCTCGTGTGGAGAAGCTCATAACCACTGGAGATTTCTCATTAGCCCTTCTCATTTGCAGAAAGGCGCATAGGGTTGTTGGCCTAATTTACAACATCCTCGGCATCCTAATTGAGGTCTTGAGGGCAAACAGTCCTCCTGTCACCGCATAA 4440 0.42 MNNSVSDNSFIIESDEEDEEKDLNKGEVDGNDSDSSNYSNENPPQRKPSSYNISWPQSYRSTSSSAPCFNSTGFVKFLVSCFCACTPRACYFMCPFLLLFLEVSRESSEQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPETLPSVTKPLIQPIEDEQQQRRSSHALLPPSRKSSLLKKDSISKISHEVPTRHCSYGQAVLNGINVLCGVGILSTPYAAKEGGWIGLSILFIFGIISFYTGLLLRTCLDSEPGLETYPDIGQAAFGTTGRIFISIVLYVELYGCCIEYIILEGDNLSTLFPNAYLNLGGIELNSQTLFAVIATLAVLPTVMLRDLSVLSYISAGGVVASVLVIICLFWVGIEDVGFHSKGTTLNLATFPVALGLYGYCYSGHAVFPNIYTSMANPNQFPAVLLACFGICTLLYAGGAVMGYKMFGEAVLSQFTLNLPQELVASKIAVWTTVVNPFTKYPLYVPCLVMSLIGSLLTMLVVTSNLELEMASGSKVDLHSFDEGLQPLPNGTIEDTLQSELERILQEQRNQQFINRERDIYRSGSAPPTVEGSLSAFGSLRNSDFGLINNRRSNNDGFLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDRRVAQRFQVGGSSSIEGFGDWRKNVATNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLSRQSSTQLVDRHMDGLARMSGAMSGAGLGARRTCYSDILQEGLDQPASLSSNMSRPASYTAFGDIMDSTGIVDRESLEGLRSSASTPGLVGLQNHGVNVSHSFASAVGSSLSRVTTPEPQVFGRPVGSAIPQMGGKAFPVEKSGIGMGTQNGHSSNLTDLTDMVSSLSGLNLSGARASEQDSLLKSKLQREVDNHPDVLLSTPSNVNLPRHNELVTDLNAFSSNDQVNLLKKTASFANLRSKVHSTGNLTSLPSTDFTSHVPALRGCRDGQSLDALGNQVGPDLHSTTLDPRLIQCLQQSSDYSMHGLSSSSDPFQMRNFSDTSHGDLEGLRKAYLETLLTQQKQQYELPLLRKSGLLNQGFFGSQPYGLGMPYSGKQIANSSVPSLGSGNPLFENERISRINSMMRSSMGGSGSSWHADMGNNMEARFASSLLDEFKNNKARPFELSDIVDHVVQFSTDQYGSRFIQQKLETASVEEKTKIFPEIIPHARALMTDVFGNYVIQKFFEHGTESQRKELASQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQSQMVSELNGAIMKCVRDQNGNHVIQKCIECVPQDRIQFIVSSFYGQVVALSTHPYGCRVIQVRPLEMDQYGNYVIQHILEHGKSHERTAIISKLAGQIVKMSQQKFASNVIEKCLTFGSPEERQILVNEMLGTSDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGDFSLALLICRKAHRVVGLIYNILGILIEVLRANSPPVTA 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1175 1210 IPR001313 GO:0003723
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1211 1246 IPR001313 GO:0003723
Sebi284g00022 1479 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1119 1437 IPR033133 GO:0003723
Sebi284g00022 1479 CDD Pumilio 1135 1433 IPR033712 GO:0003723
Sebi284g00022 1479 SUPERFAMILY ARM repeat 1122 1434 IPR016024 -
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1247 1282 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Nucleic acid binding protein NABP 818 902 IPR012940 -
Sebi284g00022 1479 Pfam Nucleic acid binding protein NABP 915 1138 IPR012940 -
Sebi284g00022 1479 Gene3D - 1304 1443 IPR011989 -
Sebi284g00022 1479 Gene3D - 1119 1303 IPR011989 -
Sebi284g00022 1479 MobiDBLite consensus disorder prediction 30 53 - -
Sebi284g00022 1479 MobiDBLite consensus disorder prediction 1 53 - -
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1334 1369 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Transmembrane amino acid transporter protein 204 483 IPR013057 -
Sebi284g00022 1479 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 615 1436 - -
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1298 1333 IPR001313 GO:0003723
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1139 1174 IPR001313 GO:0003723
Sebi284g00022 1479 ProSiteProfiles Pumilio RNA-binding repeat profile. 1370 1411 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1175 1210 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1211 1246 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1334 1369 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1139 1174 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1376 1411 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1247 1282 IPR001313 GO:0003723
Sebi284g00022 1479 SMART pum_5 1298 1333 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1182 1212 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1215 1248 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1338 1372 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1143 1177 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1308 1335 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1258 1281 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1287 1302 IPR001313 GO:0003723
Sebi284g00022 1479 Pfam Pumilio-family RNA binding repeat 1384 1413 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi284g00022 Sebi-Chr284 357340 374291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi284g00022 1 488 Amino Acid or Auxin Permease AAAP Family AT2G39130 62.903 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi284g00022 K17943 - gmx:100798281 1545.41