Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi284g00015 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTGCCACTGGCACCGGAATTTCACCCTACTGATACTGAATTTGCCGACCCGATTGCTTATATTTCAAAGATTGAAAAGGAAGCAGGGAACTTTGGGATATGTAAAATTATCCCACCGTTACCCAAACCTTCAAAAAAATATGTCTTTCATAATTTGAATAGGTCCCTCACGAAGTGCCCTGAATTAGGTCCAGATAACAGTCCCTTGGCTGGTTCTAATTCTTCAAAAATGGGGGCCGGGGATAGTGGTAGTGATGGGGTTTTGCGAGCTGTGTTTACCACAAGGCATCAAGAACTGGGACAGAGTGTGAAAAAAACCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTACATAAGCAAGTATGGCAGAGTGGGGAGGTCTATACACTGGAACAGTTTGAGTCCAAATCGAAGTCTTTTGCGAGAAGCGTGCTAGGTATGGTGAAGGATGTTTCTCCACTTGTTATAGAGGCTATGTTTTGGAAGGCAGCTTTAGAGAAGCCTATATATTTGGAGTATGCCAATGATGTGCCTGGGTCAGCTTTTGGAGAATCCCAGGGTCAATTTTATTGTAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGACTAGATAGCTCTGATTGTAAACAAAATGAAATGGGTAGTATAAGAGATACCCAAATTGATGAGACTAAGGGTGCTTCTGCCCAAAGTCCTGCAGACACGTGTTTACAGATGTCCAAGTCAGCTACAACTGTCTCAACATCTTCATCAAATGAAGCTTCACAGTCTTCCAAGGAAAAGAATTCAGATGCCAACAGTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCACGCTCATCTGGGTCACTAACACGTTTCATGCCGGATGATATTCCTGGTGTTACTTCACCCATGGTATACATCGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCCTTGCTTTTGAGGAAGTCATCCGCTCTAAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACACTTTTGACACCTGAAGTAGTTGTTGCATCTGGGATTCCTTGTTACAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCGAGAGCTTATCATCTTAATCCCTCCAGTACTTTCCATGCTCCCCCTGCCCTGTTTGCGGCAGGTTTTAACTGTGGGGAAGCAGCTAACTTTGGGACACCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGTAGAGCTGCAATGAATTATCTTCCAATGCTTTCCCATCAGCAACTGCTTTACCTGCTGACCATGTCTTTTCTTTCAAGAGTACCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAAGTTTTAGTAAAACAGGCCTTTATAGAAGATATGCTGCAAGAAAATAAACTGCTATCCATTCTTCTTGGAAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCTGATTTACTACCTGATTCCAGCAAAGATAATCAGCTTCCTGATTTAGCTTCTACTACTGGAACCTATATGGCCGACATGTCCAATATTAGTTCAGCAGATAAGGGTAGTAATTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATCTGAATGATGTATATTTTGGTTGTGATGATCTTCCATATCATTTCCAAACTGATTCAGGAGCACTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGATAATGGAACTTTTTCCTGATAATCGTCATCTAGTTCAAGATTCCTCTCTAAACTCTACTGCCGCCCTTCATAGCTCAGTCTCAAGGGATCTTTCTGTTTCTGAGCTTTCTTCAGCAAATGATTCACCAGATCAATCATTAATCAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTTAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGATATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGGAGTTGCAGAAGAAATACATAGTGCTTTTGATTATAATGATGTTCCGTTAGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTTGCAATTGATGGTGAAGAACATGGTGATTGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGATATTGTGTCAATGCTAGAAATAACTCTCCATCTAAACAAGTTCCTTGGACACTAGCATTAGGGATGCTGTTCTATGATAAATCTCCTGGTTCAGAACTTTTATCTTTAAATTGGCAGTCACGGAAAAGTCGGTCCAAAAGGTCAAAAGGTTTGGCTCAAACTAAACCTTCTGACTTGAGAAAGAAGGATGATCAATTAGAGAGAAGAATAGATTGCTCCAATGCTGGAAAGAAGCTTATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTCCTCTGTAGCAAGCATGGTCCATGAATTCCAAGAGAAGTCCAAAAATGCATCAGCTGTCTTGAGTGGGGATCATTATAATTATGTTTCTAAAGATAAGCTTGACACAGAGAATTTCAGGAGTGATTGTGGATTGTCATGTGTCTCTGCTTCCACTGCAATGTCCCCAATGCACACTGAAATCCAGATTGCTGAAGTGTCTACTAGTATGGGATTGAATACTGCTACGTCACAACTTTCAAATTCCTGTCCTAATCATATTTTAATGAATGAAAAAGTTGGGGCAGAGATTGAGAATAAAACCTTGCCGGAAATAAATATAGATGGAAAAAGTGACTCAACATTTGGTCATTCTAAGATGCATCACAATACCAGTGACTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGGAGAAGAAATATTCTAGCTTACTTACAAATGCAACTGACAGAAATATTGATATGTTCAGAAAGGATCAAATTACAGAAGCAATTGTCATGGATAGCAAGTGTAATAGCTTAGATTTGGTTGATGAAGGACATAAGGAATATCAGTCTACATGCAAAAGCAACAAGGAACCTGTGTTATCTACTGCTTCATTGGTAAACCAGCCTACTCTTGCCTCTATGGATGGAAGTTTTGAAAGTCCAAATAATAATTATGCTGCAGAAAGAGTTAGCAATGCTATGTTTTTAAAAGAGACAATTGAGGAAGAAATCAATTCTTTGAGTGAAAGGGGCAAGAAACCTCTAAGTGATGGTAAACCAATAAGTGAACATACTCCAAATGGAGAAGTTTGTGAAGTTCCAAGAGAGCTTTATGCTGCTGCAGACTTCCATAATAGAGTAATCTTGGATGCTGAGGTGCAGCAAGAAACTCAGGTTGGGAAAAGTAACGAAAAAGAAATAAATGAATCCACTCATGTCTCAGGAGAACGATCATGTGAATTTACAAAAGGGGAATATGGTGAAGGGTTGAATGATGAAGTAGTTTCAAAGTCTGCAAAGCAGTGTCAGATCCAAATTAAGAATAGAATTAATGAGGAATACGCTTCTAGTTATGTTGCAAAAGGTGATAATAGAAGTGTAACTATATCAGAATTAGGATGTTCTGAAGGTTCAGTGGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTAATTTCTGATAGAGAAAAGGAAATGGAAATCCAGCCAATTAATAGAATTGATGAGGAACTTTGCTCTGATACTGAGACATTCTTAAAGGATTCTTCTGTGTCGATACAGGAACGCTCTCAAATTGAGAAAAAGACGTGTGGTAGAGAAAACAAAAATGAAAGTGAAGTTCATTTGTTACAAGATAATAGGGAGCTGGAAAGCTGTGAGTTGACTAAAGCAGTTCCCAGGCCAAATGCTGGGAAGAGAAAAAAGAGGAAAGTGGAAGAGACAACAGACAACCAATTCGAATGCAACAGCTTTATTCGAGGTCCATGTGAGGGACTGAGGCCAAGAGCTGGGAAGATTGCCACAGGCAAAAATGGGGAGGACATCAGCCAAAATGACATGGAAAATTCGGTTGCCAAACGGGCACGGAAACCTTCTGAAGCTCCGGTTCCTCGCAAGAATAAAAAAGATGATGTTAAAAAGCCCCACAGGTGTGACCTTGATGGTTGCCGTATGAGTTTCACGACTAAGACTGAGTTATCAATGCACAAACGTAACCTTTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTATGCTTCACGAACGCGTTCATGATGATAAGAGGCCCCTTAAATGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGGGTGCATACCGGGGAGAAGCCTTATCAATGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCATAGACGGAAAACAGGGCACTATGTGAAATCTTCAGCTTGA 4665 0.4069 MGNVEIPNWLEGLPLAPEFHPTDTEFADPIAYISKIEKEAGNFGICKIIPPLPKPSKKYVFHNLNRSLTKCPELGPDNSPLAGSNSSKMGAGDSGSDGVLRAVFTTRHQELGQSVKKTKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFARSVLGMVKDVSPLVIEAMFWKAALEKPIYLEYANDVPGSAFGESQGQFYCSHRRRRKRTYYKSRLDSSDCKQNEMGSIRDTQIDETKGASAQSPADTCLQMSKSATTVSTSSSNEASQSSKEKNSDANSDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYALAFEEVIRSKGYGGNIDHLAALKLLGEKTTLLTPEVVVASGIPCYRLIQNPGEFVVTFPRAYHLNPSSTFHAPPALFAAGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFLSRVPRTLLPGVRSSRLRDRQKEEREVLVKQAFIEDMLQENKLLSILLGKEATKQAVLWNADLLPDSSKDNQLPDLASTTGTYMADMSNISSADKGSNYLLDEMSLYMENLNDVYFGCDDLPYHFQTDSGALACVGCGILGFPFMAVIQPTEKLIMELFPDNRHLVQDSSLNSTAALHSSVSRDLSVSELSSANDSPDQSLIKCNKCWNTSSKFFRPRIFCLEHAVQIVDMLQCKGGANVLIICHSDYQKIKAHARGVAEEIHSAFDYNDVPLDIASPENLALIDLAIDGEEHGDCEDWTSKLGINLRYCVNARNNSPSKQVPWTLALGMLFYDKSPGSELLSLNWQSRKSRSKRSKGLAQTKPSDLRKKDDQLERRIDCSNAGKKLIQYSRRKFKSKQSCSSVASMVHEFQEKSKNASAVLSGDHYNYVSKDKLDTENFRSDCGLSCVSASTAMSPMHTEIQIAEVSTSMGLNTATSQLSNSCPNHILMNEKVGAEIENKTLPEINIDGKSDSTFGHSKMHHNTSDSEICGKESQDCQEKKYSSLLTNATDRNIDMFRKDQITEAIVMDSKCNSLDLVDEGHKEYQSTCKSNKEPVLSTASLVNQPTLASMDGSFESPNNNYAAERVSNAMFLKETIEEEINSLSERGKKPLSDGKPISEHTPNGEVCEVPRELYAAADFHNRVILDAEVQQETQVGKSNEKEINESTHVSGERSCEFTKGEYGEGLNDEVVSKSAKQCQIQIKNRINEEYASSYVAKGDNRSVTISELGCSEGSVETCPKEDSCIQLISDREKEMEIQPINRIDEELCSDTETFLKDSSVSIQERSQIEKKTCGRENKNESEVHLLQDNRELESCELTKAVPRPNAGKRKKRKVEETTDNQFECNSFIRGPCEGLRPRAGKIATGKNGEDISQNDMENSVAKRARKPSEAPVPRKNKKDDVKKPHRCDLDGCRMSFTTKTELSMHKRNLCPHKGCGKKFSSHKYAMLHERVHDDKRPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSSA 1554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi284g00015 1554 SMART c2h2final6 1439 1461 IPR013087 -
Sebi284g00015 1554 SMART c2h2final6 1462 1486 IPR013087 -
Sebi284g00015 1554 SMART c2h2final6 1492 1516 IPR013087 -
Sebi284g00015 1554 SMART c2h2final6 1522 1548 IPR013087 -
Sebi284g00015 1554 Pfam JmjC domain, hydroxylase 324 429 IPR003347 -
Sebi284g00015 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1522 1553 IPR013087 -
Sebi284g00015 1554 FunFam Probable lysine-specific demethylase ELF6 1489 1518 - -
Sebi284g00015 1554 SMART cupin_9 291 471 IPR003347 -
Sebi284g00015 1554 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 216 291 - -
Sebi284g00015 1554 Pfam jmjN domain 17 50 IPR003349 -
Sebi284g00015 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1462 1491 IPR013087 -
Sebi284g00015 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1524 1548 IPR013087 -
Sebi284g00015 1554 SUPERFAMILY beta-beta-alpha zinc fingers 1502 1545 IPR036236 -
Sebi284g00015 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1464 1486 IPR013087 -
Sebi284g00015 1554 SUPERFAMILY Clavaminate synthase-like 291 467 - -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 1413 1437 - -
Sebi284g00015 1554 ProSiteProfiles JmjC domain profile. 291 471 IPR003347 -
Sebi284g00015 1554 Gene3D Classic Zinc Finger 1460 1546 - -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 1187 1206 - -
Sebi284g00015 1554 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1488 - -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 1192 1206 - -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 1138 1158 - -
Sebi284g00015 1554 Gene3D Cupin 9 475 - -
Sebi284g00015 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1494 1516 IPR013087 -
Sebi284g00015 1554 SMART JmjN_1 15 55 IPR003349 -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 72 93 - -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 1392 1437 - -
Sebi284g00015 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1492 1521 IPR013087 -
Sebi284g00015 1554 MobiDBLite consensus disorder prediction 223 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi284g00015 Sebi-Chr284 285149 297105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi284g00015 1 886 C2H2 Transcription Factor Family AT5G04240 55.834 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi284g00015 JmjC 7.1e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi284g00015 - - gmx:100819845 2316.58