Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi284g00004 ATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTCCCAGTCGAGGACGTCGACGGCGGCGGCGCCTCCTTGCCGTCAGTTGCTGCAACCGGAAACTGCAACTCGCTGGCGAGCATCTGGCCCCCTGAGTCCGAGTCATTTCCCGGCTCCGACTCGGTGTTTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTTTCAGTTCCGTGGGGGGAGTCTTACAATGAAGAAAGTGGAGGAGCAGCCATCATGTGCCACCAAGGAGGAATCAGTGCATACCCAATTTCAGACATCAAGCCCTGTTTCTGTTCTTGAAAGCAGCAGCTCCTGCTCTGGTGGCAAAACTGCTTCTGAGATTTACATTCCTGTGCCTTGTGGACGTGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAACCCTCGTCCTGCAATGCACCTCATTTCCCCTGCTTCCTCTTTTGTTGGGGAGAACATTCAGCCTAATGTCATCTCCACCAAGGCATCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACCAGTGACCAAGAAATGCATGCATTGTGAGATCACCAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCAAAAACTCTCTGCAATGCATGTGGTGTTCGCTATAAGTCAGGCAGGCTCTTCCCTGAATATAGGCCTGCTGCCAGTCCAACTTTTTGTCCATCTTTGCACTCCAATTCACATAAGAAGGTTCTGGAAATGAGATGCAAGGGTGTGGAGAATTCTGGTTTTGAACACATTCAGCTGCCTCACCTGAACTCATTCCCAATACTAACAGCAGCATTACCCTGGAATACATGGTTGGACTGGGTGGAATAG 873 0.52 MDEIDCGSFFDHIDDLLDFPVEDVDGGGASLPSVAATGNCNSLASIWPPESESFPGSDSVFPATALRTSPPSFQFRGGSLTMKKVEEQPSCATKEESVHTQFQTSSPVSVLESSSSCSGGKTASEIYIPVPCGRARSKRPRPATFNPRPAMHLISPASSFVGENIQPNVISTKASSDSENFAESQPVTKKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCKGVENSGFEHIQLPHLNSFPILTAALPWNTWLDWVE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi284g00004 290 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Sebi284g00004 290 PANTHER GATA TRANSCRIPTION FACTOR 47 255 - -
Sebi284g00004 290 FunFam GATA transcription factor 181 266 - -
Sebi284g00004 290 CDD ZnF_GATA 190 237 IPR000679 GO:0006355|GO:0043565
Sebi284g00004 290 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Sebi284g00004 290 Gene3D - 186 235 IPR013088 GO:0006355|GO:0008270
Sebi284g00004 290 SMART GATA_3 185 235 IPR000679 GO:0006355|GO:0043565
Sebi284g00004 290 ProSiteProfiles GATA-type zinc finger domain profile. 189 221 IPR000679 GO:0006355|GO:0043565
Sebi284g00004 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi284g00004 Sebi-Chr284 114189 116359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi284g00004 7 259 C2C2-Gata Transcription Factor Family AT1G08010 34.982 2.05e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi284g00004 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi284g00004 - - gmx:100816641 406.757