Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00057 ATGGCTTTGGTGTCTGGGGTTTTCCATACTGTGAAAAATGTGTGTGGGAGGCGGGAGAATTGGAGGTTGAAGATGAAGGTGGTTAGGGTGTGGCCTATGTGTGTCGTCACTACACCGAATGATCCTTTTGCCCTTCAAGTGTTATTTGTTGATGGGGAGGGTCAGATGATTGAAGTTGTTGTTTACAAGGAGAACATGAAGAGGTTTGTGAAAGCATTTGTTGAGGGAGATGTGTATAAGGTTACCAACTTCGGTGTGAGTCGGAACACCGGTAGGTTTAGAGCTGCTCGTCATGATTATAAGTTGGTTTTCAATGCCAACACGAAGGTCCAACTTTGCCAGGGGATATCATTTCCTTTCCCAAGGCTAGCCTTGGTGAAGTCTTCTGAAATAAGGAAGACTTGTGGAAATTCAAAATATCTGTTAGATTTTATGGGGGTTCTTACTGCTATCTCAGAGGAAATTAATCTGAACAAGGAAGGGAGGCAAACTAGGCTTATGTTGCTGGACTTAGTTGATGAAGAGGGGGATATAAGGTGTGCTGTTTTCGGGGAGATGGTTAATACTGTGTCAGGCTTGCTTTCTTCAACAACCATAGGACTCCCAGTCGTCATCATTCAGCTGGCAAGGGTTAATTTGTACAAGGGCAAAGTAGGAATCCAAAATGTCTTGAATGCTTCTAGGATTTACTGGAACCCGGATCTGCCAGAGGCTATAGAGTTCAAAACGAGACAGGCGTCGTCCATGAGCGATGAGTTTTTGCATGACGGTTTCTTCATCATATTAGCAAGGATTAGTGAGATTCTTGAGGATTGCAGGTGGTGGTACACGGCTTGCACTTGTATGAGACGCATCAAATTTGATCGTGGATATCCATTCTGTGAACATTGCAATGCATGCGTCTTCGAATTGACGTCGAGGTATAAGATAAAAATGTTGGTGGCCGACGGGGTTGATGACGCACAAGTGGTGATGTTTGACCATGAGTGTTCTTTGTTGTTACAAAGTAGTTGTAGGGATTTGCTATCCGTTAACAAGGGTAACTCACCTGATGAATTCCCAGAAGAGATTAGTAGGTTGGTTGGGAAGGAACTCCTTCTTCGAATTGAGCGGCAAGGAGATGGACTATATACATCTAATGACTGCTACAAAGTTGCAAGCTTATGTACAGATTTGGATCTCATTGAAGATTTTAGATCAAAAATGGAAGAAGAAACACCAATTAAGATGAAATTTGCCCCACATTTCACCAAAATGGGAATGGTTGACGGAGAGACATCTGCATATGTTACCAAAATTGCATTGCTTGAGGGTGATAGCTCTGCTGTTGAAGTTTCACCACACGGGAATTCTGGAGTATCCGAGCTTAGCGTTACCCCATTCTCAACGGGAGGTTCATCCTCCAGCCCTGGGGAAAGTATCTCTGTTGTGAAAAGTCTTGGCAGTGATTCTTTGGAGGGACCCTCAGAGAACAAAACTATCCCCACGATGAAGGGCGTTAAGATTGAGTAA 1512 0.4365 MALVSGVFHTVKNVCGRRENWRLKMKVVRVWPMCVVTTPNDPFALQVLFVDGEGQMIEVVVYKENMKRFVKAFVEGDVYKVTNFGVSRNTGRFRAARHDYKLVFNANTKVQLCQGISFPFPRLALVKSSEIRKTCGNSKYLLDFMGVLTAISEEINLNKEGRQTRLMLLDLVDEEGDIRCAVFGEMVNTVSGLLSSTTIGLPVVIIQLARVNLYKGKVGIQNVLNASRIYWNPDLPEAIEFKTRQASSMSDEFLHDGFFIILARISEILEDCRWWYTACTCMRRIKFDRGYPFCEHCNACVFELTSRYKIKMLVADGVDDAQVVMFDHECSLLLQSSCRDLLSVNKGNSPDEFPEEISRLVGKELLLRIERQGDGLYTSNDCYKVASLCTDLDLIEDFRSKMEEETPIKMKFAPHFTKMGMVDGETSAYVTKIALLEGDSSAVEVSPHGNSGVSELSVTPFSTGGSSSSPGESISVVKSLGSDSLEGPSENKTIPTMKGVKIE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00057 503 Gene3D - 129 236 IPR012340 -
Sebi282g00057 503 MobiDBLite consensus disorder prediction 444 503 - -
Sebi282g00057 503 Gene3D - 8 113 IPR012340 -
Sebi282g00057 503 Gene3D - 238 398 IPR012340 -
Sebi282g00057 503 CDD RPA1_DBD_C 258 397 IPR047192 -
Sebi282g00057 503 SUPERFAMILY Nucleic acid-binding proteins 256 385 IPR012340 -
Sebi282g00057 503 SUPERFAMILY Nucleic acid-binding proteins 129 245 IPR012340 -
Sebi282g00057 503 CDD RPA1_DBD_B_like 143 245 - -
Sebi282g00057 503 MobiDBLite consensus disorder prediction 444 491 - -
Sebi282g00057 503 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Sebi282g00057 503 Pfam Replication factor-A C terminal domain 258 372 IPR013955 -
Sebi282g00057 503 SUPERFAMILY Nucleic acid-binding proteins 8 118 IPR012340 -
Sebi282g00057 503 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00057 Sebi-Chr282 900579 903125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00057 45 369 Core DNA Replication Machinery Family AT5G08020 22.581 5.82e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00057 - - lja:Lj6g3v0884310.1 300.441