Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00053 ATGGGAATGCCATCTAGCTTGAGAAAAAATGAAATCTGGAAATGTGAAAAACTACTCAGCGGCCTAGCAATGGCATACCCATCAATGGACATACTTACCCATGTGGATATCCAAGGTCTGTGTTGGGATGAAATCCTTCCCAAAGGAGGACATAGGGGTGGAGTCCAGGAGATGCCATTGTTGGAGAAGAAGAAGAAGCGAAAACAAAATGAGTGCTCCTATGGAGACGGAGGTCACCCTGCAGCAGCAAAATCCGAAACCGATCAAAACGGCGTCGCTTCCCAGCACTCACCAACTTCTTCTACGCTTCCCGAAGACAAAGTTCTTGTCCCTGTTGAGGTATGCTTAAAACCTTCCAGCACAGCTCCGATACACGATGTCCGTTCAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATATTGATGGACCCATTCCCGTGCCCCTTGATGAACCATTTCTTGCAGATAACGTGCAAAGAATTTGCGTTTGTGAAACAGATGAAGGGATGCACAATGATAATGTACTTTTGTTCTGGCAAGTTAAGCCTGTTGTACACGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAGCGGTTGTTACGTTATGCAGCGAGTGCTTTGCTCTTTACCGAGAAAGGTGTTGATCCATTCCTTGTTTCATGGAACCGAATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGATACCCACAGTGCCAACTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTAGTTAACGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATGATTCTAACCACATCCAACATAACTGCTGCTATCGATATTGCATTTGTTGATCGAGCTGATATCAAAGCTTATGTTGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAACTGATCCGTACAGGGATATTAACTAGTTTTCAGGATTGTAAGAATGCCATGCTTCCAAATTATGCTAGTGCAAAGCAGAGGTTGAACGCACCAGATTTTGTTAAGGCTGCTACATCCATGCAACTATGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCACTTACAAATCCTTTTGATTGCAACCCTGTCAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1578 0.4303 MGMPSSLRKNEIWKCEKLLSGLAMAYPSMDILTHVDIQGLCWDEILPKGGHRGGVQEMPLLEKKKKRKQNECSYGDGGHPAAAKSETDQNGVASQHSPTSSTLPEDKVLVPVEVCLKPSSTAPIHDVRSAVEGMLEKRSLSYIDGPIPVPLDEPFLADNVQRICVCETDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVMILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSFQDCKNAMLPNYASAKQRLNAPDFVKAATSMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALTNPFDCNPVKFLCTMVETAKRERSELPD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00053 525 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 90 522 IPR044539 -
Sebi282g00053 525 SMART AAA_5 259 411 IPR003593 GO:0016887
Sebi282g00053 525 MobiDBLite consensus disorder prediction 87 103 - -
Sebi282g00053 525 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 263 281 IPR001270 GO:0005524
Sebi282g00053 525 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 377 391 IPR001270 GO:0005524
Sebi282g00053 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 489 IPR027417 -
Sebi282g00053 525 Gene3D - 202 426 IPR027417 -
Sebi282g00053 525 Pfam ATPase family associated with various cellular activities (AAA) 263 408 IPR003959 GO:0005524|GO:0016887
Sebi282g00053 525 MobiDBLite consensus disorder prediction 66 103 - -
Sebi282g00053 525 CDD RecA-like_Pch2-like 209 407 - -
Sebi282g00053 525 ProSitePatterns AAA-protein family signature. 381 400 IPR003960 GO:0005524|GO:0016887
Sebi282g00053 525 FunFam pachytene checkpoint protein 2 homolog 203 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00053 Sebi-Chr282 770062 776961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00053 208 426 Calmodulin-binding Proteins AT3G56690 30.357 1.47e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00053 K22399 - gmx:100812167 794.653