Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00048 ATGCCGCCGGATTCAACCGAGCAAGACGATGATCCTGAAAACGAGTTCGCCGAAATTGATCCCACCGGTCGATATGGTCGGTACAAGGAAGTTTTAGGGAAGGGGGCTTTCAAGAAAGTATACCGAGCGTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAAGTTAAGGTGGCTGATCTAGTGCGTAACTCTGTGGACTTGGAGCGCCTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAATTTTACAATTCATGGGTTGATACCAAGAATGAGAATATAAACTTCATTACTGAAATTTTCACCTCAGGAACATTGCGACAATACCGGCAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTCATATCTTCATAGTCATAATCCGCCAGTTATTCATCGAGACGTCAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGTGAGGTGAAAATTGGTGATTTAGGGTTGGCGGCCATCCTTCAACAGGCCAATTCAGCTCACAGTGTTATAGGTACCCCAGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAACGAGCTTGTTGATATCTATGCTTTTGGGATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTCAGTTTAAGCATCAACTTGATAAGAACACTTATGCTGCTATAACTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCTTGAAGTTAAAGCCTTTATAGAAAAGTGTATCGCTAATGTATCAGAACGGTTGCCTGCAAAGGATCTCTTAATGGATCCCTTCCTTCAGTCAGATTATGATAGTGAAAGTATAGGCCGATCTTTAAGATCCGGAACCCATCATTCAGGAAATAAATGTGATATTCAAGCTGTTGGAAAAGGTGTGGTGGATAATTCTGTTGAGACAAGTAGGGAATTCACTGTTGAAGGTCAGAGGAGAGATGTTAATACAATATTTTTGAAACTGCGAATTGAAGATTCCTCAGGTTATATTCGCAATATCCACTTCCCTTTTGATGTCGGAGCTGATACTTCAATCTCAGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTTCAACTATTGCTAAGATGATTGACTCAGAAATTCGATATCACATTCCTAGTTGGAATCCCAGTGAAACTCCTGTCAATTGTTCTTGTCAAGATCCAGGCAGTGCCTCTGAAACTAAGCCTGAGGCTTCTCCTATGGGAAATGAATCTATCACTCCTACTAGCAGTCTTGCGTTAGAAATATTACCTTCAGGTCGTAAATACTGGTCAGACTCACCAAAGGCTGTCGGTGGAAGCTCTCCATCTCGGCATGGTGCTTCAAACTTGTGTTATGAAGTGGATGCGAATGCTGGGGAAGCCAGCTTTGCTGCAAATAGTGCGAAGGAATGTGATGGGACGGCTGATCCCCCTTTCAGCAAGAGAAGTATTACATCGGAGTATTTAAAAGCAACTGGTGAAAAATCTTCTCAAGAAGCAATTTCTGGAAGTTTGAAAGATTCTGAAAAAGAATACATCAATAAAATGGCAATAAAACTGGAGAAATTGTTGGTTAAGCAAAGAGAGGAGGTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAAATCTTCTGCAGGAACTTTCTCCAGAAATGTGCCAGAAGGTCCTTAATATATGCAACCTGCAGGTGCCTGACGGTGGAATGTAG 1827 0.4116 MPPDSTEQDDDPENEFAEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLVRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRQKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDVKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSQFKHQLDKNTYAAITGIKPASLAKVTDLEVKAFIEKCIANVSERLPAKDLLMDPFLQSDYDSESIGRSLRSGTHHSGNKCDIQAVGKGVVDNSVETSREFTVEGQRRDVNTIFLKLRIEDSSGYIRNIHFPFDVGADTSISVAGEMVEELELTDQDVSTIAKMIDSEIRYHIPSWNPSETPVNCSCQDPGSASETKPEASPMGNESITPTSSLALEILPSGRKYWSDSPKAVGGSSPSRHGASNLCYEVDANAGEASFAANSAKECDGTADPPFSKRSITSEYLKATGEKSSQEAISGSLKDSEKEYINKMAIKLEKLLVKQREEVDELKRKHKLAVSNLLQELSPEMCQKVLNICNLQVPDGGM 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00048 608 Coils Coil 555 582 - -
Sebi282g00048 608 MobiDBLite consensus disorder prediction 1 20 - -
Sebi282g00048 608 ProSiteProfiles Protein kinase domain profile. 26 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00048 608 Gene3D Transferase(Phosphotransferase) domain 1 109 306 - -
Sebi282g00048 608 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Sebi282g00048 608 Gene3D - 353 445 - -
Sebi282g00048 608 MobiDBLite consensus disorder prediction 423 453 - -
Sebi282g00048 608 MobiDBLite consensus disorder prediction 1 16 - -
Sebi282g00048 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Sebi282g00048 608 Pfam Protein kinase domain 29 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00048 608 SUPERFAMILY Protein kinase-like (PK-like) 28 300 IPR011009 -
Sebi282g00048 608 FunFam Probable serine/threonine-protein kinase WNK3 353 444 - -
Sebi282g00048 608 CDD STKc_WNK 24 299 - -
Sebi282g00048 608 SMART serkin_6 26 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00048 608 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Sebi282g00048 608 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 576 - -
Sebi282g00048 608 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 411 IPR024678 GO:0004674|GO:0005524
Sebi282g00048 608 FunFam probable serine/threonine-protein kinase WNK9 109 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00048 Sebi-Chr282 714144 717409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00048 102 605 MAP Kinase Kinase Kinase AT3G48260 52.860 6.14e-162 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sebi282g00048 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00048 K08867 - gmx:100301899 855.899