Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00042 ATGGAGATGCAGCGCATCGTTGAATTCCCTCACACTTACATGGATCGGCCCCCAAGAAAGAGGGCGCGTTTGGGCTGGGACATCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATACCACTAGTTCTCTGTTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGAAGGCCATTACATGTTTGAGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGCGAAGGAACTTTTGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAAGAAATGGTTGCCGTAAAAATTGTACGCGGGGTAAAGAAGTATCGAGAGGCAGCCATGATTGAAATTGAGGTGCTGCAACACCTTGGCAAACATGATAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTGTAGCATTCATGCATGACTTACACATGATCCATACTGATCTGAAGCCTGAAAACATACTTCTAGTTTCACCTGAGTATCTTAAAATTCCTGACTACAAGAGTTCATCCAGATCACCAGGTTCCTTTTTCAAGAGAGTGCCCAAGTCTAGTGCTATTAAGGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGAATTACATTGTATCAACACGTCACTATAGAGCACCTGAAGTTATCCTTGGACTTGGATGGAGCTATCCATGTGATGTATGGAGTGTGGGTTGTATATTGGTTGAGTTATGCACCGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCCATGATGGAGAGGGTTCTTGGTCCGATACCGCAGCAGATGTTGAAGAGAGCTGACCGACATGCTGAGAAGTATGTCCGAAGGGGTAGATTGGTCTGGCCGGAAGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTCGACTACAGGGTCTACTCAGATATGACCCTTTTGAAAGACTCACAGCTAGGGATGCTCTGAGACATTCATTCTTTATGAGAGATCACCTTAGGAGATGA 1221 0.4382 MEMQRIVEFPHTYMDRPPRKRARLGWDIPEVPKAQVGLFCGQEVENISSYAPSEHTTSSLFKGVARNGSPPWRDDDKEGHYMFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEVLQHLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLHMIHTDLKPENILLVSPEYLKIPDYKSSSRSPGSFFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRADRHAEKYVRRGRLVWPEGATSRESIKAVMKLPRLQGLLRYDPFERLTARDALRHSFFMRDHLRR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00042 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Sebi282g00042 406 Gene3D Transferase(Phosphotransferase) domain 1 147 399 - -
Sebi282g00042 406 FunFam Serine/threonine-protein kinase AFC2 80 173 - -
Sebi282g00042 406 CDD PKc_CLK 80 399 - -
Sebi282g00042 406 Pfam Protein kinase domain 93 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00042 406 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 402 - -
Sebi282g00042 406 SUPERFAMILY Protein kinase-like (PK-like) 80 402 IPR011009 -
Sebi282g00042 406 SMART serkin_6 93 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00042 406 ProSiteProfiles Protein kinase domain profile. 93 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi282g00042 406 FunFam Serine/threonine-protein kinase AFC2 169 399 - -
Sebi282g00042 406 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00042 Sebi-Chr282 619861 623180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00042 258 399 EF-hand Containing Proteins AT5G22840 31.481 2.38e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Sebi282g00042 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00042 K08287 - gmx:100808961 789.645