Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00027 ATGGCAGAATCCTGCCTTCTCTCTTCTCCCTCCTCCCTCTTCTATAACAAAGCCAAACACTACCCTTTTTTCTCAATTCCCTCCAAACCCCTCAAACTCCAACTCTCATGCCTCAATTATTCTTCCCCCTCTCTCTCCCTCACTTCCAGAACCCACCGCTCTCCCATGCCCCTTTTCGTCGCCCAAACTTCAGACTGGGCCCAGCAAGGAGACAACACAGACACAGTCACCCTACAAGACCAATCAGAAGGAGAAGGAGAAGGAGAAGGTGTGAGTGAAACCGAAGCAGGACTTTCGGATTGGGAACCCAACGGCGAAGACGCAGAAACCGAGGGCGACGAAGAAGGGGGTTTCGTGGAACCACCTGAAGATGCAAAACTCTTCGTTGGAAACTTGCCTTACGATGTTGATAGTCAGAAATTGGCCATGCTTTTCGAGCAGGCTGGAACCGTCGAAATTGCTGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGTGGCTTCGGATTTGTGACCATGAGTACAGTTGAAGAAGCTGAGAAGGCTGTGGACAAGTTTAACCGTTATGATTATGATGGAAGAATGTTGACAGTTAATAAGGCTTCTCCAAGAGGATCTCGGCCTGAACGCCCACCTCGTACCTTTGAACCTGCCTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGATAACACTCGGCTGGAGCAAGTTTTCAGTGAACACGGTAAGGTTGTGAGTGCTCGGGTTGTCTATGACAGAGAGTCTGGTCGATCACGTGGCTTTGGATTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGACAATCAGAGTGAATGTTGCCGAGGATAGGCCCAGGCGGGGTTCCTTTTGA 915 0.4896 MAESCLLSSPSSLFYNKAKHYPFFSIPSKPLKLQLSCLNYSSPSLSLTSRTHRSPMPLFVAQTSDWAQQGDNTDTVTLQDQSEGEGEGEGVSETEAGLSDWEPNGEDAETEGDEEGGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDKFNRYDYDGRMLTVNKASPRGSRPERPPRTFEPALRVYVGNLPWDVDNTRLEQVFSEHGKVVSARVVYDRESGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVNVAEDRPRRGSF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00027 304 MobiDBLite consensus disorder prediction 64 82 - -
Sebi282g00027 304 FunFam 31 kDa ribonucleoprotein, chloroplastic 209 303 - -
Sebi282g00027 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Sebi282g00027 304 MobiDBLite consensus disorder prediction 100 118 - -
Sebi282g00027 304 Gene3D - 209 304 IPR012677 -
Sebi282g00027 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
Sebi282g00027 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Sebi282g00027 304 SUPERFAMILY RNA-binding domain, RBD 121 213 IPR035979 GO:0003676
Sebi282g00027 304 PANTHER OS02G0815200 PROTEIN 26 299 - -
Sebi282g00027 304 CDD RRM2_NsCP33_like 220 295 - -
Sebi282g00027 304 MobiDBLite consensus disorder prediction 64 121 - -
Sebi282g00027 304 SMART rrm1_1 220 293 IPR000504 GO:0003723
Sebi282g00027 304 SMART rrm1_1 126 199 IPR000504 GO:0003723
Sebi282g00027 304 SUPERFAMILY RNA-binding domain, RBD 212 302 IPR035979 GO:0003676
Sebi282g00027 304 Gene3D - 62 208 IPR012677 -
Sebi282g00027 304 FunFam 31 kDa ribonucleoprotein, chloroplastic 61 208 - -
Sebi282g00027 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00027 Sebi-Chr282 437769 440440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00027 113 301 Eukaryotic Initiation Factors Gene Family AT3G16380 35.323 2.16e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00027 - - gmx:100810381 436.417