Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00010 ATGATGGATGGACGGCGGCATTCAGTTGATATTCCTATTTCTAAGACTCTTGTAGCACTGAGGAGAGTTAGGTCGTTGAGGGATCCATCAACTAATCCTATGAGCAAACTCTCCACTTTGGTTGATAATGTGCACTGGGAAAACGACGGTTTAGGCAATGGGATTTCTCTGCTGTTTCCGGATGCTGCTCGTGCATGTGATTCTGATGATAATGTTGCTTTTAGATCAAGGGATTTAGGTTATAAGGGACAAAAAGAGCAGGGTGCTGCTGATTTTGAATTGAATTGTGGCATGTTGAAATCTAGGCTGAAGCCTAGTGGGATGTCATGTCATGGTGGCAAACAAGATGATGAACAAGTTCACTCTGATCCAAATCGGCAATGCATTTCTGGAAGTAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGACCTCCTAGTAATAATTTCAAGGATGGGGAATCATGCTATAGGGCAACTACCAGAACATCTCAATTAGGGAGAATAGATCACTCTAGGTTAGCCATTCGCAAGAATCAAGTAAAACCATCAGAAGTAGTGGGTGGTATTGTTAGCCATTTAGGCAGTCCATGCCTTTCTGTTCGTGACACTTTCTCGCCCCATGGTGCCTCTGTAGGTATAAATCAAGATTTTGATGTTCTAGATAATAATGATGATGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCAAGGTTTAGAGAACCAAATCTTTATAGTGAGATGGAAGACCGTCCCTTGATATTGCACAGCATTGATGACACAGATCTTCATGGACATAGAAGCATGAGAGACAATGGTGGTGAAATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCTAAGTCATTTAGTGATCTGGTAGGGCAAAATGTCGTAGTAAGGTCTCTTTTGGGGGCAATCTCCAGAGGAAGGATAGCATCATTTTATCTCTTTCATGGTCCTCGTGGTACAGGCAAGACATCTGCTTCTAGGATATTTGCTGCTGCATTGAATTGCCTTTCTTCTGTTCAGGAGCAAAGACCATGTGGTCTGTGTAGAGAATGTATTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAATGGGGAGACATGGGCAAGCTTATCAAATAACCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTAGAAGTGCAGTTTGCAGGGCTCAGAGGTATCACTTTCCTAAGGTCAAGGATGCTGATATTGCATGCAGATTAGAAAAGATTTGTGCCGAAGAAGGTCTTGATTTTGAGCAGGCTGCTTTGGACTTTATTGCTACAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGTTTGGTAAAACGATCAAGCTTTCCTTAGTATATGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTCGATTTGCTTGATCTGGCTTTGTCATCTGACACTACTAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAGCTGGCAAATCTCATTATGGACATCCTTGCGGGGAAATGTGAAAATGGTAGTTCTGAAGTCGGGAGTAAATTTTCTAGTAGATATACCTCGGAAGCAGACCTTCAGAAACTAAGCCATGCATTGAGAATACTTTCTGAAACTGAGAAACAGCTTAGAATTTCAAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCCTTCCATGGATGCAAATGATACCAAGTTGTGTTTGAAAGGTGCATGCAATGGAGGGCAGAGCTTGGAGCATGTTGCTACAGATCAGTGTGATAACAGTTCATATAGATTAGGAGTGCTGGAAGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAATCAGCTAAAAACTTTCCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGAAGTCTTACTATTGCTGAGTTGGAGTTCCACCATCGTCACCATGTATCCAAGGCTGAGAAATCATGGAAATTGATTGCAAGTTTCTTGCAGTTCGTGTTGGGTTGTAACGTTGAGTTGAGGATCACTTATGTACCTCGTACTTCTGATTCTAAGTATGCCAAACTGAAGAGGACATCGTTCAGAATCTTTAGTTGTTCACGCAGAATACAGCAGAAATCATTATCGTCTAATGAACTAGGAAGTGAATTAGACTATGCTGATTACACCTCTCAAAATCCAATGATGAAGGATAAAACTCTTACTTCTTCCTTTGATTGTGGATCTCGGGTGCCACATGGAGAGTCTTACCATGGAATTGATGCTGTAAAAAATTTAAGAAGTTGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCTTTTCAAGAGACTATGGGAACATCATGTTCTGGAGTTGAGTCCTCTAAGGATGAGGGATGCAAATGTGCACATGTTCCATCATCAATCCTCGATTCAGATAATAATCAGTCTACCTGTTTTCCTCAAACTCTCTGGCTACAAAAGAAGTTCCGTACTTCACATTCATCCAAGTTGACTTTTCAGGGTATCCAACAACAGAAAGATTTTGTTTTATCCATCCCAAACTGTACATGTTCTGAGACATATACCTATGCTAATTAA 2853 0.4048 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNPMSKLSTLVDNVHWENDGLGNGISLLFPDAARACDSDDNVAFRSRDLGYKGQKEQGAADFELNCGMLKSRLKPSGMSCHGGKQDDEQVHSDPNRQCISGSKSPSESCGSNHGGKGPPSNNFKDGESCYRATTRTSQLGRIDHSRLAIRKNQVKPSEVVGGIVSHLGSPCLSVRDTFSPHGASVGINQDFDVLDNNDDGCGISCCWSKSPRFREPNLYSEMEDRPLILHSIDDTDLHGHRSMRDNGGEISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVQEQRPCGLCRECILFFSGRSKDVKEVDSVRINRTDQVKSLVKNACIPPVSSRFKVFIIDECQLLNGETWASLSNNLENLSQHVVFVMITPDLDKLPRSAVCRAQRYHFPKVKDADIACRLEKICAEEGLDFEQAALDFIATKSCGSVRDAEMMLDQLSLFGKTIKLSLVYELTGVISDDELLDLLDLALSSDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGSSEVGSKFSSRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLQLSSVDYPSMDANDTKLCLKGACNGGQSLEHVATDQCDNSSYRLGVLEDHKGTLDSIWYKATEICQSNQLKTFLRKKGKLSSLHVDRSLTIAELEFHHRHHVSKAEKSWKLIASFLQFVLGCNVELRITYVPRTSDSKYAKLKRTSFRIFSCSRRIQQKSLSSNELGSELDYADYTSQNPMMKDKTLTSSFDCGSRVPHGESYHGIDAVKNLRSCEGNLLSSGERFLNRSFQETMGTSCSGVESSKDEGCKCAHVPSSILDSDNNQSTCFPQTLWLQKKFRTSHSSKLTFQGIQQQKDFVLSIPNCTCSETYTYAN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00010 950 MobiDBLite consensus disorder prediction 105 158 - -
Sebi282g00010 950 CDD HLD_clamp_pol_III_gamma_tau 463 526 IPR045085 -
Sebi282g00010 950 Gene3D - 283 461 IPR027417 -
Sebi282g00010 950 FunFam Protein STICHEL-like 1 isoform C 527 640 - -
Sebi282g00010 950 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 290 724 - -
Sebi282g00010 950 NCBIfam DNA polymerase III subunit gamma/tau 289 636 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sebi282g00010 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 512 IPR027417 -
Sebi282g00010 950 FunFam DNA polymerase III subunit gamma/tau 464 526 - -
Sebi282g00010 950 Pfam DNA polymerase III, delta subunit 305 463 - -
Sebi282g00010 950 Gene3D - 527 640 - -
Sebi282g00010 950 Gene3D - 464 526 - -
Sebi282g00010 950 SUPERFAMILY post-AAA+ oligomerization domain-like 528 637 IPR008921 GO:0003677|GO:0006260
Sebi282g00010 950 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00010 Sebi-Chr282 171445 175198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00010 280 528 Core DNA Replication Machinery Family AT1G21690 25.397 1.82e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00010 - - gmx:100812040 1416.36