Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00006 ATGAATGTGAGAAAGGAAGAAGGAGAAACCCAAGTAGCAATGGTGGGTGAGGTTTTCCCCTGGTTGAAATCGCTTCCGGTGGCGTTGGAGTACCGGTCGAGCGCGCCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTGTAAGATCATTCCTCCGATTCCCCCTTCCCTAAGAAAACCGCAATTTCCAACCTGA 228 0.4781 MNVRKEEGETQVAMVGEVFPWLKSLPVALEYRSSAPEFQDPIGYIFKIEKEASKYGICKIIPPIPPSLRKPQFPT 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00006 75 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Sebi282g00006 75 Gene3D Cupin 11 74 - -
Sebi282g00006 75 PANTHER LYSINE-SPECIFIC DEMETHYLASE 20 67 - -
Sebi282g00006 75 Pfam jmjN domain 32 62 IPR003349 -
Sebi282g00006 75 SMART JmjN_1 27 68 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00006 Sebi-Chr282 138375 138602 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00006 17 73 C2H2 Transcription Factor Family AT5G04240 57.895 1.79e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi282g00006 JmjN 2e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00006 - - gmx:100775813 99.7525