Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi282g00001 ATGGCAGGTTCAGAGGCAAACGGCGACGTTTTCCCATGGCTGAAATCGATGCCGGTAGCGCCAGAGTACCGGCCAACCGCGGCGGAGTTCGAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCAAAGTACGGCATCTGCAAAATCATTCCACCGTTCCCACCGTCGTCAAAGAAAACCGCCATAGCCAACCTAAACCGTTCACTCCCCAACTCCACATTCACGACACGTCAGCAGCAGATCGGGTTCTGTCCCCGTAAGCCCCGCCCCGTGCAACGCCCCGTTTGGCAGAGCGGTGACCACTACACCTTTCATGAATTCGAGACCAAGGCCAAGTCCTTTGAGAAAACTTACCTGAAGCGTCACCATAACAAGAGCAGTAGTAAAAATCAAAATCCCCTTGAAACTGAGACACTCTTCTGGAAGGCCACCGTAGATAAACCCTTTTCCGTTGAATATGCCAATGACATGCCTGGCTCTGCTTTCTCCCCCAAATGCCGTCACGCTGGTGAGCCTGCCTCGCTTGCTCACACTGCTTGGAACATGAGAGGGGTTTCAAGGGCCAATGGTTCTTTATTGAGGTTCATGAAGGAGGAGATTCCTGGGGTAACTTCCCCAATGGTGTATGTTGCCATGCTCTTCAGCTGGTTTGCTTGGCATGTCGAGGACCATGACCTTCACAGCTTGAATTACCTCCACATGGGTGCTGGAAAGACCTGGTACGGCATCCCCAGAGAAGCTGCCGTTGCATTTGAGGAAGTTGTTAGGGTTCATGGCTATGGCGGAGAGATAAACCCTCTCGTTACTTTTGCCATTCTTGGTGAGAAAACCACAGTAATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGTGCTCCTTCACTTGGAACTTCAAAGCAGTTTCTGATGTGGAATATCCTCATCTTTAAGGGTCTCTCTTTTCCTTTTGATTTGCTTTGGCATAGAATTGTATTCATGCCTTCTCTGTGGTGCTCTGCTATGGCTGTTTCAGGGGAGTTCCCATTTCTGATATGCAGAGAGATGGGAAAGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACGTTTCCAAGAGCCTACCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGACTTTGTGCTGAACCTCGAAGTTCTCGTCTTAAAGATAAGAAGAAGGATGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGGTACAGAACAATGATCTGCTTCATGTACTCGGAAAAGGTTCTTCTGTAGTACTTCTTCCTCGCAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGCATTGGTTGCCAACAACGAAAAGTGAACCCTGGGTTTTCTTTCAATGTAAGCAATTCCAAGGGAATAAATTCATCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAACAGGAATCATGGAATGAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACATTGGGTGAAAGGAAAAGGATTTCCTCGTTCAATGCAAATGGTAACACAAGCACTTCAGGATGGACCAAAAAGAATGCTCAAGATGGTTTATACAATGCTTCTGTTCAATCTGCTCATGACCAGAGACAGACTGCAGATCGGAATTATGAGGATGCTTTAAATACTGAAAGAGGAAAAGGCAATACAGCTCTTGGATTATTGGCTTCAGCATATGGAAACTCTTCTGACTCTGAGGAAGAGCAGGGTGACTCAGATATTGCAGTTGAAGGTCATGGATCAAATGTGATGAGCTCTACATCAGGAAGATTACCTTCTCATTTTCAAGATTCCCATGCTAATCCCATGGCTAGACTTGATAGGGGAGATGATATTCCTTCAAAGAGTGCCAGTTATGAGGATTATATGCATTATAGATTTGAGTATAATTTGAGTCATCAGTCTTTTGACCACTCTGTAGAGAAACAGGATTATAAACTCACTTCAGGAGTTGCTTTTAAAAATAAAAGGGCAGTGCCTAATACCACCTCTAATTGTTCCCAAGACGCTCATGATGTTGAAAATTCATTGTCAGTCAAGGCTATGGTCCCCGTCAATAATAAAAATGCTTTGGTACCACAGACTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGACAGAGGCTGAAGCGAAGTTGGCAGCAGAAGAGTTGGGGATTGATTACATGTGGAAGAATATTGCATACAGGCATGCCACCAAGGAGGATGAGGAGAGGATCCAGTCAGCCCTGGATAGTGAGGATGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTACAGTGCAAGTCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCACCCGTAGAACCAAAGGTCTATCGGAGAAGGGTCAACAAGCAGAAAAAGGTAGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTGTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGATATCACCTGATGAGAAAATTGAGAGATTGGAAAGTACCCCTAAAAGCGAAACTAATATCAGAAAATCAGGTAGGAAAAGGAAAATGACTGTACAGAGTAAGCAAACAAGGAAAGGAAGTTTTGCGGAGAAAGATGTGGTTTCGGATAATTCCACTGAAGATGAACCCAAGCCAAAGAGGATTGTTAGAAGCAAGCAAGCTAGGCATATTGAGAAAGATGGTGCAGCTTTGGATGGGGATGATTCTCCTCCATATCATCGTATAAAACCCATAAGCAAGCAAACAAATTGCACTGAAAGTGATGCAGTTTCTGATGATTCGCATAATGATAAATATCAGATACGGGATAGAAGGAATTTTAAGGTCAAAAAAGCTAAATTTATTGACAATGATGTGACTTCAGATGATACATTGGACCATGATTCTGATTGGCAGCAGAGGGGAGAACTTAGAAGCAAGCCTGGTGAAGACACAGAGAGAGATTCAATTTCAGAGGATTCTTTGGATATTGGCTCCCTTCAGCTGCACGGGAAGACTTCTAAAAGCAAGCATGCGAAATACATTAGTGAAGAAGATGCAACTTCTGATGACCAAATGGAGAATCATTGTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAAGTGCCTAGATGAAAAAGATATAATGATATCTGATGACCAACTGGAGCTGAACATGCAGAAGCTGTGTCGGAGGAATCCTAAAAATAAACAAGCCAAACACCTCACTGAAGAGGATACCATATCAGATGACCAAGTGAAGGCCCATTGTCGCAAGTATCAAAGTAGCACTCCTAAAGGCAGGCAAGCCAAATGTGTAGCAGGGGAAAATGTAATGTCTGATGACCAATTGGAGGATGACTTTCAGAAGCAGCAAACAAGTTTTTCTAGACGAAGGAAAAACAAAGGCATTGATAGAGAAGTTAAAAAAGTAATGTCTGATGACCGATTGGAGGATCACCTTAAGAAGCCGCAGAGAAGATTTCCTAGGAGCAGACAAAACAAACGCATTGATAAAGAAGTTATGGATGACTTGGCAGAAAATAATTCTCATCTACTACATAGAACTCCTAAAAGGAAGCAAGTTGAATGCATGGATGAAGATGATATGAAATCAGATGACGAAATGGAAGATGATTCTCCTCAGCAGCACAGGAGAACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCTCTCCAAGTGAAAAACCAGACATCTCGGACAGTAAAGCGAGGGGCTCGGATGCTGATGAAATCAAAGGCTCCTCAGCAAGTAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTGGTAACTCCAGAGAGTTTAATTTACATATGGAAGAGGAAGAAGGCGGACCTAGCACGCGCCTTAGGAAGAGAGTATCAAAAGCTCAGGAGTCTGAAGGAAAATTGAAAGACAAGCAAACCAAAAGGAAAAAGGTGAAGAACGCTACAGCTGCAAAGGTATCAGCTGGCCATGCCAAAATGAAAGATGAGGAATCAGAATACCAGTGTGACATTGAGGGGTGCACAATGAGTTTTAGGTCAAAACAGGAGCTGGTGCATCATAAGAAAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCCTTGAGGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGTATGTGCTGAGCCAGGTTGTGGGCAAACTTTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCAGCAAAAAAGTGTCGTCAATAG 4743 0.4345 MAGSEANGDVFPWLKSMPVAPEYRPTAAEFEDPIAYIFKIEKEASKYGICKIIPPFPPSSKKTAIANLNRSLPNSTFTTRQQQIGFCPRKPRPVQRPVWQSGDHYTFHEFETKAKSFEKTYLKRHHNKSSSKNQNPLETETLFWKATVDKPFSVEYANDMPGSAFSPKCRHAGEPASLAHTAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGIPREAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCSAPSLGTSKQFLMWNILIFKGLSFPFDLLWHRIVFMPSLWCSAMAVSGEFPFLICREMGKLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGLCAEPRSSRLKDKKKDEGETVIKELFVQDVVQNNDLLHVLGKGSSVVLLPRSSVDISVCSKLRIGCQQRKVNPGFSFNVSNSKGINSSKGFVSDDLVFNRNHGMKQEKSFYSVKDKFTTLGERKRISSFNANGNTSTSGWTKKNAQDGLYNASVQSAHDQRQTADRNYEDALNTERGKGNTALGLLASAYGNSSDSEEEQGDSDIAVEGHGSNVMSSTSGRLPSHFQDSHANPMARLDRGDDIPSKSASYEDYMHYRFEYNLSHQSFDHSVEKQDYKLTSGVAFKNKRAVPNTTSNCSQDAHDVENSLSVKAMVPVNNKNALVPQTDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKTEAEAKLAAEELGIDYMWKNIAYRHATKEDEERIQSALDSEDAIPGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYYAFGRSSPASSPVEPKVYRRRVNKQKKVVAGKWCGKVWMSNQVHPLLAKRDCEDVEDEKSLHGWISPDEKIERLESTPKSETNIRKSGRKRKMTVQSKQTRKGSFAEKDVVSDNSTEDEPKPKRIVRSKQARHIEKDGAALDGDDSPPYHRIKPISKQTNCTESDAVSDDSHNDKYQIRDRRNFKVKKAKFIDNDVTSDDTLDHDSDWQQRGELRSKPGEDTERDSISEDSLDIGSLQLHGKTSKSKHAKYISEEDATSDDQMENHCQKQQRRIPKSRQGKCLDEKDIMISDDQLELNMQKLCRRNPKNKQAKHLTEEDTISDDQVKAHCRKYQSSTPKGRQAKCVAGENVMSDDQLEDDFQKQQTSFSRRRKNKGIDREVKKVMSDDRLEDHLKKPQRRFPRSRQNKRIDKEVMDDLAENNSHLLHRTPKRKQVECMDEDDMKSDDEMEDDSPQQHRRTLRSKQSKPKTLQQMKQANSLQVKNQTSRTVKRGARMLMKSKAPQQVKQPSHLRNKQSGNSREFNLHMEEEEGGPSTRLRKRVSKAQESEGKLKDKQTKRKKVKNATAAKVSAGHAKMKDEESEYQCDIEGCTMSFRSKQELVHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKCRQ 1580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi282g00001 1580 FunFam Probable lysine-specific demethylase ELF6 1544 1573 - -
Sebi282g00001 1580 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1383 1401 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1047 1110 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 954 968 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 954 1160 - -
Sebi282g00001 1580 Pfam JmjC domain, hydroxylase 356 387 IPR003347 -
Sebi282g00001 1580 Pfam JmjC domain, hydroxylase 210 297 IPR003347 -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1127 1160 - -
Sebi282g00001 1580 SUPERFAMILY beta-beta-alpha zinc fingers 1488 1520 IPR036236 -
Sebi282g00001 1580 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1516 IPR013087 -
Sebi282g00001 1580 Gene3D Classic Zinc Finger 1483 1573 - -
Sebi282g00001 1580 Gene3D Cupin 13 409 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1301 1320 - -
Sebi282g00001 1580 ProSitePatterns Zinc finger C2H2 type domain signature. 1519 1541 IPR013087 -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1268 1289 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1346 1371 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 643 659 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1301 1454 - -
Sebi282g00001 1580 SUPERFAMILY Clavaminate synthase-like 101 419 - -
Sebi282g00001 1580 Coils Coil 1425 1445 - -
Sebi282g00001 1580 SUPERFAMILY beta-beta-alpha zinc fingers 1527 1572 IPR036236 -
Sebi282g00001 1580 ProSiteProfiles Zinc finger C2H2 type domain profile. 1517 1546 IPR013087 -
Sebi282g00001 1580 ProSiteProfiles JmjC domain profile. 177 405 IPR003347 -
Sebi282g00001 1580 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1158 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 982 1031 - -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 1402 1435 - -
Sebi282g00001 1580 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1511 IPR013087 -
Sebi282g00001 1580 MobiDBLite consensus disorder prediction 624 676 - -
Sebi282g00001 1580 Pfam jmjN domain 21 54 IPR003349 -
Sebi282g00001 1580 SMART JmjN_1 19 60 IPR003349 -
Sebi282g00001 1580 FunFam Probable lysine-specific demethylase ELF6 1514 1543 - -
Sebi282g00001 1580 SMART c2h2final6 1517 1541 IPR013087 -
Sebi282g00001 1580 SMART c2h2final6 1464 1486 IPR013087 -
Sebi282g00001 1580 SMART c2h2final6 1487 1511 IPR013087 -
Sebi282g00001 1580 SMART c2h2final6 1547 1573 IPR013087 -
Sebi282g00001 1580 ProSiteProfiles Zinc finger C2H2 type domain profile. 1547 1578 IPR013087 -
Sebi282g00001 1580 SMART cupin_9 177 405 IPR003347 -
Sebi282g00001 1580 ProSitePatterns Zinc finger C2H2 type domain signature. 1549 1573 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi282g00001 Sebi-Chr282 46653 55806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi282g00001 765 866 C2H2 Transcription Factor Family AT5G04240 32.353 1.97e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi282g00001 JmjC 1.4e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi282g00001 - - gmx:100775271 1453.73