Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi281g00037 ATGGAACTTGCTTTGAGCTTAGGCGATGCATCAAAGCCTTTCTCATTACTTGACAAAAACAACCCCACAAAATTACCACCCAACAAAGACCCACTCGGTTTCTGCATAACTAGAAATAATTCTTCAGAGGAAAGAAGAGGTTCTTCAGATCCACCCATTCAGCTTGACCTTCTTCCTTCAACACCAGTCCTTCGTTCACACCTTCGAATTCCATGGCTCAATGATGCACTAGAACGTGTGACATCAGAACCACCGGCGAGAGGAGCATTCGATGTGAACCGATTCCCGTTGCCGGCGGCGGAGGACACCGACGACGGTGCTGCAATTTCATCCCCAAACAGTGCGGTTTCATCTTTTCAAATGGATTTCAGCAGAAAACACGATGCTGAGAGAGGTAGCGATGATGAAGAAAATGAAAACGGTTCAACTCGGAAGAAACTCAGACTCTCAAAAGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCCAAGCAGAAACTTGCTCTTGCTAAACAGTTAAATCTCCGTCCTCGTCAAGTTGAAGTTTGGTTTCAGAATAGAAGGGCAAGGACGAAGTTGAAACAAACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGTGAGACGTTAACCGAAGAGAATAAGAGGTTGCAAAAGGAGCTTCAAGAACTTAGGGCTTTGAAAACTTCTCAACCATATTACATGCAACTTCCAGCTACTACTCTCACTATGTGTCCCTCTTGTGAAAGGGTCGCCACCAACACCACCGGTGGTAACAATAGTGGCTCAAAAATCCCTGCCGCGTTGTCTCTTGGGAAGCCCAGAGTATTGGGTCAGGCCCAGAAGGCCCATCAGATTGCTTCATGA 885 0.4542 MELALSLGDASKPFSLLDKNNPTKLPPNKDPLGFCITRNNSSEERRGSSDPPIQLDLLPSTPVLRSHLRIPWLNDALERVTSEPPARGAFDVNRFPLPAAEDTDDGAAISSPNSAVSSFQMDFSRKHDAERGSDDEENENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPYYMQLPATTLTMCPSCERVATNTTGGNNSGSKIPAALSLGKPRVLGQAQKAHQIAS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi281g00037 294 Coils Coil 206 236 - -
Sebi281g00037 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 267 - -
Sebi281g00037 294 MobiDBLite consensus disorder prediction 86 149 - -
Sebi281g00037 294 Pfam HD-ZIP protein N terminus 86 119 IPR006712 GO:0005634
Sebi281g00037 294 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Sebi281g00037 294 MobiDBLite consensus disorder prediction 34 48 - -
Sebi281g00037 294 Gene3D - 148 198 - -
Sebi281g00037 294 SUPERFAMILY Homeodomain-like 134 201 IPR009057 -
Sebi281g00037 294 CDD homeodomain 144 201 IPR001356 GO:0003677
Sebi281g00037 294 SMART HOX_1 142 204 IPR001356 GO:0003677
Sebi281g00037 294 MobiDBLite consensus disorder prediction 107 121 - -
Sebi281g00037 294 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Sebi281g00037 294 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Sebi281g00037 294 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Sebi281g00037 294 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Sebi281g00037 294 MobiDBLite consensus disorder prediction 18 55 - -
Sebi281g00037 294 MobiDBLite consensus disorder prediction 123 149 - -
Sebi281g00037 294 FunFam Homeobox-leucine zipper protein 18 128 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi281g00037 Sebi-Chr281 978978 980041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi281g00037 89 256 Homeobox Transcription Factor Family AT3G60390 61.421 9.92e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi281g00037 Homeodomain 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi281g00037 K09338 - gmx:100776113 372.474