Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi281g00036 ATGGGGGAAGAGAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCGGAGCCAGCTACTGGGTCCATAACCAATGAAGCTGTGAACTTGGACGATTGGATTGGGGACCCTCTTCACAGAATTAGCGAAGCTGTGAGGCTTAGGGCGCGACATAGGTGGAGATGGCGGCATCTACCTATCCCTCCTCCTGAACTTCATGTTCACGTTCCATCTGAAGCTGCAAGACATTTTTATATCCCACCTCCACCCCTACTCCCAGATATGCCGGTGGAATTGGAAAGTTTTTTGGTCAATTCTGGTAATGCAAGCGCGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGAGGAGAGACCGGAGGAGGAGGTGCCGAAAGCGTGTGAGATCAACAATGGTGTTACTGAGGATGAGACATCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGAGACTTCTTTGATTGTAATATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTATATAGATGGTTGCATCTTCATTCGGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAGAGTGTTACCCCAATATATGGCCGTGGAAACAATGCTCGTGGTCCTGAGGAGGATTCCAGTCTTAAGATCCCTCCTAGGCCTCAAGCAAGGCGTGTTGAGAGCTTGAGACAAACTATTCAAAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATTTTACTAGGGATTTAGTTCAGCCGCGTGAACAAGACAATGGTCGTGAACCAGCAGAGACAACAAGTTCTGTAATAAGTAGGTTTTTGACATCTCGAGGCTTGAGGAGAGAGCAGAATCTTGTGGCACCCCCTCAAGATGATGTAGTGGGTTTACCACAGAACAATGTTGTTAGTGCTGAGGTAGGGGGTGATAACCGGAGGGTGCAATCCCTATTGCTTCGAAGAACACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGAAACCAAGAACAACCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAACTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCCTCTAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCCCGTGCTCCAAGGCGCAGACGTATCAACTGA 1338 0.4694 MGEENSDAMNLDLNLGPGPEPATGSITNEAVNLDDWIGDPLHRISEAVRLRARHRWRWRHLPIPPPELHVHVPSEAARHFYIPPPPLLPDMPVELESFLVNSGNASALQAGEGSVAAEERPEEEVPKACEINNGVTEDETSQKKDDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNARGPEEDSSLKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDFTRDLVQPREQDNGREPAETTSSVISRFLTSRGLRREQNLVAPPQDDVVGLPQNNVVSAEVGGDNRRVQSLLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRIN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi281g00036 445 MobiDBLite consensus disorder prediction 110 150 - -
Sebi281g00036 445 CDD RING-HC_AtRMA-like 158 201 - -
Sebi281g00036 445 MobiDBLite consensus disorder prediction 413 445 - -
Sebi281g00036 445 SUPERFAMILY RING/U-box 155 213 - -
Sebi281g00036 445 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Sebi281g00036 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 136 328 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi281g00036 445 SMART ring_2 160 200 IPR001841 -
Sebi281g00036 445 Pfam Zinc finger, C3HC4 type (RING finger) 160 200 - -
Sebi281g00036 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 250 IPR013083 -
Sebi281g00036 445 MobiDBLite consensus disorder prediction 423 445 - -
Sebi281g00036 445 FunFam E3 ubiquitin-protein ligase RMA3 128 249 - -
Sebi281g00036 445 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi281g00036 Sebi-Chr281 945750 947087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi281g00036 1 436 C3H Transcription Factor Family AT3G58030 53.863 1.94e-138 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi281g00036 K10666 - gmx:100811099 692.575