Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi280g00009 ATGGATGATGCAATGACAAAAAATTATCTTATGGAAGAAACAAAGGATTCAAATGCTTTAGCTCCAACTGAGGTAGATTCTGAAAAAGCATGTGAACACGATACAAGATTGGATGAACAAATTGGAATCTATTGCCTTAAATGTGGCAATGTGATCATAGAGATAAGAGATATCATGGGACCCTTTGTACAACCACGCCGAGGAAGGTGCTACCAAGAGGAGGAGCAATGCAATGGAGATTCCAAGCCCGAGCTCGAGCCAAAGGATAAGGATAAGAAAGATAATGATTCTCGTGCTATTACAATTAATACATCTCATTATGAGCCTTTATCTACAGAAAGTGACAATGTCTGGTCACTGATTCCTGAGCTCAGCAAGAAGGTTCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGCTACTTAAAGTTAATCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAATTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACCAGTGATGTCAATCATGTTTTGGATTGCCTTCAAAAGATTAAAAAGTGGCATCTACACGCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGATGAAAGTAGAAACAGAACTGAGAATATTACTTTCGGGTACATTGTTTCAGAATTATTTTGGTGAATACTTCAATACACTTTGCCTGGCAAGGCTAAAGTTTGTTCAAGAAGTGTTGAAAGAATTAGATATAAAACAAAATAAGGGAAATGATAAAAATCCAGAGAAAACACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTTAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGAAACTGCAAAAGAAAATGGTTGGGACCAGTGTGTTCCCTTAGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCCAAACAGCAACAAGGTAGCGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGTGTTCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTATGAGGATCCATGTGGAGTTTCAAAGAATCCATCGAAGATAAAGCAAGCTATTATAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGGAAAAAGCTCAATGGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAATAG 1641 0.3833 MDDAMTKNYLMEETKDSNALAPTEVDSEKACEHDTRLDEQIGIYCLKCGNVIIEIRDIMGPFVQPRRGRCYQEEEQCNGDSKPELEPKDKDKKDNDSRAITINTSHYEPLSTESDNVWSLIPELSKKVHDHQKKGFQFIWQNIAGYLKLIPDKKPLILAPKITLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDVNHVLDCLQKIKKWHLHASVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLMKVETELRILLSGTLFQNYFGEYFNTLCLARLKFVQEVLKELDIKQNKGNDKNPEKTQHLLETRARKFFLDDIANKIDSSDDEVRMQGFNMLRKITSGFIDVYESGNSDKLPETAKENGWDQCVPLGGRAYGNPWINTSMVDPNSNKVASKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEVFFKWKKDGEILLLYGEQDLFERGKVIDKYEDPCGVSKNPSKIKQAIIRAFRPGQEKMVYVYQLLGKSSMEEDKYRRTTWKE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi280g00009 546 Gene3D - 143 348 IPR038718 -
Sebi280g00009 546 MobiDBLite consensus disorder prediction 73 99 - -
Sebi280g00009 546 Gene3D - 498 546 IPR027417 -
Sebi280g00009 546 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 427 498 IPR044567 GO:0080188
Sebi280g00009 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 311 IPR014001 -
Sebi280g00009 546 MobiDBLite consensus disorder prediction 73 103 - -
Sebi280g00009 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 313 IPR027417 -
Sebi280g00009 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 544 IPR027417 -
Sebi280g00009 546 Pfam SNF2-related domain 153 327 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi280g00009 Sebi-Chr280 600156 602395 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi280g00009 SNF2_N 8.3e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi280g00009 K10875 - qsa:O6P43_013801 583.948