Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi280g00007 ATGGATGATGCAATGACAGAAAATTATCTTATGGAAGAAACAAAGGATTCAAATGCTTTAGCTCCAACTGAGTTAGATTCTAAAAAAGCATGTGAACATGATACAAGATTGGATGAACAAATTGGAATCTATTGCCTTAAATGTGGCAATGTGATCACAGAGATAAGAGATGTCATGGGACCCTTTGTACAACCACGCCGAGGAAGGCGCTACCAAGAGGAGGAGCAATGCAATGGAGATTCCAAGCCCGAGCTCGAGCCAAAGGATAAGGATAAGAAAGATAATGATTCTCGTGCTATTACAATTAATACATCTCATAATGAGCCTTTATCTACAGAAAGTGACAATGTCTGGTCATTGATTCCTGAGCTTAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTATGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATGAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGTGTTCCAAACCCCACCAGTGATGTTAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATACGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAAACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAGTTAGATATAAAACAAAAGAGGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTACTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAATAGCAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGAACCTATGAAGCTTTTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGCTCAATGGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGTCAAGCGGAGAAGATTGAAGATGATATACTAAGGGAAATAATTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1989 0.3846 MDDAMTENYLMEETKDSNALAPTELDSKKACEHDTRLDEQIGIYCLKCGNVITEIRDVMGPFVQPRRGRRYQEEEQCNGDSKPELEPKDKDKKDNDSRAITINTSHNEPLSTESDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPMILAPKTTLYTWYKEFMKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYTAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKRGNDKNPEKAQHLLETRARKFFLDDITNKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKIATSADKFYTSQELNQLEKFKSDFRVGSKVRFILSLIFRVVKEEKVLIFCRNLEPMKLLVQLFEEFFKWKKDGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEGSMEEDKYRRTTWKEWVSNMIFSEDFVENPSQCQAEKIEDDILREIIENDESKAIHMIMKNEKASKN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi280g00007 662 Gene3D - 95 395 IPR038718 -
Sebi280g00007 662 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 352 IPR014001 -
Sebi280g00007 662 MobiDBLite consensus disorder prediction 67 99 - -
Sebi280g00007 662 Gene3D - 431 597 IPR027417 -
Sebi280g00007 662 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 596 IPR044567 GO:0080188
Sebi280g00007 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 354 IPR027417 -
Sebi280g00007 662 MobiDBLite consensus disorder prediction 66 112 - -
Sebi280g00007 662 Pfam SNF2-related domain 139 456 IPR000330 GO:0005524|GO:0140658
Sebi280g00007 662 SMART ultradead3 124 364 IPR014001 -
Sebi280g00007 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 616 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi280g00007 Sebi-Chr280 458777 461185 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi280g00007 SNF2_N 2.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi280g00007 K10875 - qsa:O6P43_013801 867.07