Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00148 ATGGAAAACTCTGAGCTCTTCCTCCAATTCCTTGCCAACAGCAACAGTTCCTCCTTCAATTCTGCATCATCTTATGGATTCCCAGCTTCAGCAACAGCTATGAAGCAACATAGATTCTGCAATTCCTCTTCTTTTTACCCTTTGGAAGCATCTGATCAAATTGCTGCCGAAGCACCTTCCCATCAGGATAAAGCCCTTGCTGCTTTGAAGAATCACAAGGAAGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATAAGCTTCGCACTCTTCTTCCTTACAAAGCTTCACTTCTTGCAAAGGTGGTCCAAAGAGTGAAAGAGCTGAAGCAACAAACATCAGAAATCACCGAAGAATTTGAAACCATTCCTTCAGAGACGGATGAGATTACGATTCTATCCACAAGTGGCAGTGATGGAAGGATCATATTCAAAGCCTCTTTGTGCTGTGAAGACCGCTCTGACCTAATCCCTGACCTCATCGAAATCCTAAGGTCTTTGAACCTGAAAACGCTTAAGGCTGAAATGGCAACGCTTGGAGGAAGAACTCGTAACGTTCTTGTGGTGGCTGCGGATAAAGATCACAGCATTGAATCGATCCAGTTTCTTCAGAACTCGTTCAAGTCTTTGCTAGAACGCTCTAATTCTAGTGAGAGATCCAAAAGACGCCGTGTCATGGACCGAAACTTGATGGCTTGA 705 0.4482 MENSELFLQFLANSNSSSFNSASSYGFPASATAMKQHRFCNSSSFYPLEASDQIAAEAPSHQDKALAALKNHKEAEKRRRERINSHLDKLRTLLPYKASLLAKVVQRVKELKQQTSEITEEFETIPSETDEITILSTSGSDGRIIFKASLCCEDRSDLIPDLIEILRSLNLKTLKAEMATLGGRTRNVLVVAADKDHSIESIQFLQNSFKSLLERSNSSERSKRRRVMDRNLMA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00148 234 Coils Coil 101 121 - -
Sebi27g00148 234 Pfam Helix-loop-helix DNA-binding domain 71 100 IPR011598 GO:0046983
Sebi27g00148 234 SMART finulus 73 117 IPR011598 GO:0046983
Sebi27g00148 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 121 IPR011598 GO:0046983
Sebi27g00148 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 135 IPR036638 GO:0046983
Sebi27g00148 234 PANTHER TRANSCRIPTION FACTOR BHLH30 37 229 IPR045847 GO:0003700|GO:0006355
Sebi27g00148 234 Gene3D - 61 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00148 Sebi-Chr27 2875658 2877674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00148 5 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 57.205 4.59e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi27g00148 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00148 - - gmx:100790009 296.975