Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00141 ATGGCGAGACGTCTGGTTCCTCTGCTCAACCGTGTTTTGGTCGAGAAAATCATCCCTCCATCAAAAACCAACACCGGCATTCTCTTACCAGAAAAGTCCTCCAAGTTGAATTCTGGAAAAGTTATTGCCGTTGGCCCTGGCATTCATGGAAAAGATGGGAAGCAGATTCCTGTAGCTGTAAAAGAAGGTGACACTGTCCTTTTACCTGAATACGGAGGAACTGAAGTGAAGCTTAATGACAAAGAGTACCCTATGATTACTAAGGTGAATTTTAGGAATAGACGGGTGCAGTCGGGGATTATAGTCTCAAGGCGGCATGGCTTGTAA 327 0.4495 MARRLVPLLNRVLVEKIIPPSKTNTGILLPEKSSKLNSGKVIAVGPGIHGKDGKQIPVAVKEGDTVLLPEYGGTEVKLNDKEYPMITKVNFRNRRVQSGIIVSRRHGL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00141 108 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 PANTHER 10 KDA HEAT SHOCK PROTEIN 2 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 SUPERFAMILY GroES-like 4 87 IPR011032 -
Sebi27g00141 108 Gene3D GroES chaperonin 1 90 IPR037124 GO:0006457
Sebi27g00141 108 FunFam 10 kDa chaperonin, mitochondrial 1 99 - -
Sebi27g00141 108 CDD cpn10 4 83 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 Pfam Chaperonin 10 Kd subunit 5 87 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi27g00141 108 SMART Cpn10_2 4 89 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00141 Sebi-Chr27 2711446 2713089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00141 3 80 Calmodulin-binding Proteins AT5G20720 40.506 8.29e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00141 K04078 - gmx:100306384 147.132