Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00140 ATGTTATCTTCTCAGGCTCAGTCATGTACTATGATAGCTGCAACAATAGTATTTGTTGTAGCACAAGTAATTGTGGGAGCAAATACCCTTTCAGAAGCTGATAAGATAAGCGCTTTGCCTGAACAGCCACCAGTGAAATTCCAGCAATATGGTGGTTACATTACAGTTGATGAAGTGCAGAAGAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTCCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGTCCTTTCAAACCTAGTGAAAATGGTCTTTTGAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCATACTCTGCTAATAAATCTTTCTATGACTTTGTCAACGATGAAATGACAGCAAGGGATAATCTTGTTTTCCTACAACATTGGTTCACTAAATTCCCAGAGTACAAGAACAATGACTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAGACAAAGTTCAATCTCATGGGGATAGCAATAGGGAATCCTCTTCTAGAATTTAACACGGATTTTAACTCCAGAGCTGAGTTTTACTGGTCCCATGGACTAATATCAGATTCAACATACGAAATGTTCACTAAAGTATGCAACTATTCCCAAATTAGAAGACAATATCAAAATGGGAAACTTACTCCCATTTGTGCAGGAGTAAATAAACTAGTGGTATCGGAGGTTAGTAGATACATTGATACATATGATGTTACTCTTGATGTCTGTCTATCATCAGAAAATCAACAGGCTTATGTGCTGAATCAACTGACTCAACAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACAATCACATACTTGAACAGAAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTTGTAGGGATCACCAGATGGTCAACTTGCAGTGGGGTTCTCAGATATGACATGCAGAATCTGGAGATTCCAACCATTTCTATTCTAGGGGCACTTGTTAAGTCAGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTGATCCCATTACTTGGGACACGATCTCTGGTAAATGGATTAGCCAAGGAGTTGGGGCTGAATACAACAGTATCCTATAGAGCCTGGTTTAAGGGAAGTCAGGTAGCTGGATGGACTCAAGTATATGGAGACATTTTATCATTTGCCACCATAAGAGGAGCAGCTCATGAAGCTCCATTTACACAACCAGAGAGATCATTAGTGATGCTAAAAGCATTTTTGGAAGGAAAGCCACTTCCAACTATTCTCTGA 1401 0.404 MLSSQAQSCTMIAATIVFVVAQVIVGANTLSEADKISALPEQPPVKFQQYGGYITVDEVQKRALFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNDYSWNKEANMLYLESPAGVGFSYSANKSFYDFVNDEMTARDNLVFLQHWFTKFPEYKNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLMGIAIGNPLLEFNTDFNSRAEFYWSHGLISDSTYEMFTKVCNYSQIRRQYQNGKLTPICAGVNKLVVSEVSRYIDTYDVTLDVCLSSENQQAYVLNQLTQQLQEGEKIDVCVEDETITYLNRKEVQEALHAKLVGITRWSTCSGVLRYDMQNLEIPTISILGALVKSGIRVLVYSGDQDSVIPLLGTRSLVNGLAKELGLNTTVSYRAWFKGSQVAGWTQVYGDILSFATIRGAAHEAPFTQPERSLVMLKAFLEGKPLPTIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00140 466 Pfam Serine carboxypeptidase 42 459 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 SUPERFAMILY alpha/beta-Hydrolases 43 463 IPR029058 -
Sebi27g00140 466 FunFam Carboxypeptidase 29 463 - -
Sebi27g00140 466 FunFam Carboxypeptidase 360 459 - -
Sebi27g00140 466 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
Sebi27g00140 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 446 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Sebi27g00140 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Sebi27g00140 466 Gene3D - 361 459 - -
Sebi27g00140 466 Gene3D - 314 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00140 Sebi-Chr27 2706109 2708993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00140 322 462 Calmodulin-binding Proteins AT2G22960 30.496 3.32e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00140 K16297 - gmx:100805028 829.32