Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00128 ATGACCACGATGAATTCAGGGTCACTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGTTCTCATTGACCATGCAATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTAAGGAGGGGTTGGATTGCAGAACGCTTGTTCTCTTGCAGGTTGACTCGCTGTTCAAGAGATGATCATGGAGAGATGAATATGAACCAAGTTAGCAATTACAGCTTTGGGGAGGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTGATTCAATGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTGTGGATCTCCTGAAGGCAACCGAGATTGGAAAAGCTGTTAATCCTCTTCGAAAGCATGGATCAAAGGATATTTCTCAACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGGTTCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAACTCAAACTGGTTCAATGGAACTCTCGCAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTGACTATGGAATTTCGTATGCTTAGTCTTGCTATCTTTTGCTCTATGGTTCTTTATTTGAATTCCCCACTTCTTAGTTTGATGGTTGTGAATGGGGAATTCTGTTTAGATCCTCAACAAAGTGGGGAATTCATCAAGAACCTTGGCAGAAGACCATGTATGAACAGTCAAAATATAGCAAAGCCAAATAGTAATCCACGGGTTTCAAATGAGGCAAACACTGTTCCCAAGGACAGTAAGAGTCAGCAAGCAAAGAAAAATGAGGCTGCTGTGAGGCTAAATAAACCAAAAACTGCTGATTCTGGCCCTGGCAGACCACCAAAATCAACCATGCAGAAAGAAGGCAATATTCAGCCAAAGATGCAGCAAAATATATTGAAGAGTGCTGTCCCAAAGAAGCCTCATGTTGATCAGCTAGATAAATTCAAGTGTTTGGATGATGCTGCAGTCCAAGTAAAGTTAGAAGCCACTAAGAGGAAACTTCAGGAGCGATATCAACAAGCTGAAAATGCTAAGAAGCAGCGGACAATAAAGATTATGGAGTTGCATGACCTCCCAAAGCAAGGGACTGGTAACCGTAATACACATGTCAAACCCGGAAATCATAAGAGGCAATGGGCTCATGGACGGAGGTAG 1335 0.4262 MTTMNSGSLDYWRNYFRGANADIFVLIDHAIMVAASDCPKEFKLRRGWIAERLFSCRLTRCSRDDHGEMNMNQVSNYSFGEAEALTDEIEEESQYFEEVLRIRDIVLNFKEESDSMLFESLRRLQLMELTVDLLKATEIGKAVNPLRKHGSKDISQLARTLINVWKGMVDEWVKATTPIAGSEGTPDSVNPSVVDEEEGLPSPPMDEGALFATQTGSMELSQFFDGMDDDGSELTMEFRMLSLAIFCSMVLYLNSPLLSLMVVNGEFCLDPQQSGEFIKNLGRRPCMNSQNIAKPNSNPRVSNEANTVPKDSKSQQAKKNEAAVRLNKPKTADSGPGRPPKSTMQKEGNIQPKMQQNILKSAVPKKPHVDQLDKFKCLDDAAVQVKLEATKRKLQERYQQAENAKKQRTIKIMELHDLPKQGTGNRNTHVKPGNHKRQWAHGRR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00128 444 ProSiteProfiles TFIIS N-terminal domain profile. 97 172 IPR017923 -
Sebi27g00128 444 SMART TFS2_5 96 171 IPR003617 GO:0005634
Sebi27g00128 444 MobiDBLite consensus disorder prediction 288 313 - -
Sebi27g00128 444 MobiDBLite consensus disorder prediction 288 350 - -
Sebi27g00128 444 Pfam TFIIS helical bundle-like domain 121 169 IPR017923 -
Sebi27g00128 444 CDD TFIIS_I 97 170 - -
Sebi27g00128 444 Coils Coil 384 411 - -
Sebi27g00128 444 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 95 183 IPR035441 -
Sebi27g00128 444 MobiDBLite consensus disorder prediction 179 202 - -
Sebi27g00128 444 MobiDBLite consensus disorder prediction 416 444 - -
Sebi27g00128 444 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 180 IPR035441 -
Sebi27g00128 444 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 432 IPR044805 -
Sebi27g00128 444 MobiDBLite consensus disorder prediction 430 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00128 Sebi-Chr27 2583006 2586641 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sebi27g00128 Med26 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00128 - - gmx:100775579 610.527