Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00125 ATGTTAGCATTATCTCCTTCTCCTATGTTCTCAACCATTGGATATTGGCCCTTTGATGAGGAGCCTATAAGCCAAAGCCAGAAAAACTACTTCTACAAAGACACTGAGGACTCATTAGAACAATTTCATCATCAGTTGTCTTCATCTCATCAGCCACAGGGTGAGATCCAGAATTCCACTCCCTCACCAGCCATAAGCAGTGACCTTAGCATGGTTAAGAAGCTTATTCACAATGCTAGTGAACGTGATCGCAGAAAGAAGATCAATGCTATGTATTCTTCACTTCGTTCACTACTTCCTGTGGCAGATCAAATGAAAAAATTGAGCATTCCAGCAACAATTTCACGAGTCCTAAAGTACATACCGGAGTTACAGAAGCAGGTGGAAGGACTAACTAAGAAAAAGGAAGAGATCTTATTGAGAATTTCTAAGCAAGGGGATGCAGTGATCAGTAAAGAATCTCAAAGGAAGATTGTCCATTCCAAATCCAAACCCAACTCTGGTTTGTAG 510 0.4078 MLALSPSPMFSTIGYWPFDEEPISQSQKNYFYKDTEDSLEQFHHQLSSSHQPQGEIQNSTPSPAISSDLSMVKKLIHNASERDRRKKINAMYSSLRSLLPVADQMKKLSIPATISRVLKYIPELQKQVEGLTKKKEEILLRISKQGDAVISKESQRKIVHSKSKPNSGL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00125 169 Coils Coil 121 141 - -
Sebi27g00125 169 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 145 - -
Sebi27g00125 169 FunFam Transcription factor ORG2 68 163 - -
Sebi27g00125 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 141 IPR036638 GO:0046983
Sebi27g00125 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Sebi27g00125 169 CDD bHLH_AtORG2_like 73 145 - -
Sebi27g00125 169 SMART finulus 78 130 IPR011598 GO:0046983
Sebi27g00125 169 MobiDBLite consensus disorder prediction 44 64 - -
Sebi27g00125 169 Pfam Helix-loop-helix DNA-binding domain 74 125 IPR011598 GO:0046983
Sebi27g00125 169 Gene3D - 67 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00125 Sebi-Chr27 2534135 2535383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00125 1 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 45.238 2.13e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi27g00125 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00125 - - vvi:100262373 181.415