Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00096 ATGGCTATGGTCTCAGCTGGTTTCCACAAAGTGGCTGACATCTGTGGTAGAAGGGAAAGTTGGAGGTTGCGCCTCAAACTTATCAGGGGTAACTGCATAGAATCTGTCATTCAGAAGCACTTCATGCACCGGTTTGCCAATTCTGTCATAGAAGGTGAGGTTTACAATGTTACTCAGTTCACTGTCGCTCGAAATAGTGGGAAATTCAGAGCAACTCATCATGACCACAAGCTAACCTTTAATGCCAACACAAGGATTGTCCCATGTCTGACGGTTGCTATTCCAGGCACCGGTTTGAGCCTCGTGAAGACCTCTGATATCTTGAAGACCAAAGGTTCTTCTCAGTATCTTGTGGATTTCATGGGTATTGTTACTGGTATATCAGAAAAGCTGACTCTAAGAAAGGAAGGGAGGCAAACATGCCTCATGCTCATCGATATGGTGGACGAAATGGGAAAGATTAGATGTGCTATTTTCGGGCAACTCATTGACACTATGAAAGGGTTCCTTACTCTTTCCCGCTGCGGTCTGCCTGTGCTAATCATCCATCTTGCTCGTGTGAATCTTTACAGGGGGGAGGTGGGCATTCAAAACCTACTTAATGCCTCAAAGCTGTTCTGGAACCCTGAAATACCTGAGGCAATAAAGTTCAAAAATAGCCTCGCTGTCCACAAGATTGAAACCGATGTGGAGATCTCCCTGATTTCAGACAATAGGTGCCCTGTCTCTATGCGCGAGCAATTCCTCACAATGTTTCCCAGGAAACGTGTGGGGGACCTGAACCACATGCTCGAGGATGGAACTTATATAGTTCTTGGTACAATAACAGAGGTCTTCCAGGAAGACGACTGGTGGTACATAGCATGCTCCTGCATGAGGGCTGTTGACTTCAGCCAAGGTTTTCCCTATTGCGACGATTGCAAACGTGAGGTGTTCAACATGTCACATAGGTACAAGGTTAAGATACTTGTAGCTGATCAATCAGATTCCAGTGAACTAATCATGTTTGACTCGGCATGTTATTCTCTACTTAACATACCTTGCAAGGGGCTACTTTCGGACTATAAAGCTAGGAAGACTGATGGTTATCCACCTGAAATCTTAGATTTCATTGGCCAAGAGATGTTTTTCAGCCTTGAACTCAATGCAGAGAAATCTTCCTCATTCGATGGAGAGGCCATCAAAGTGCAGAAAATATGTTTAGATGCATGCATTCTCAATGAGTATAAGGAACTCATTGATGATGAGACTCCTTTAAAGTCTCCATCCACTCCATGTACTGGAACTGTCGACTGCAAACTTCCTGTTCAGGTGAAAGATGATGAGCCATGTGAAAAAAAAGGAGGAGGGGAAAGGCTAAAGTCATCAAGTTGGAAAAAACATGATTTACCGGAAGTGAAGCTTCCCTAA 1410 0.4418 MAMVSAGFHKVADICGRRESWRLRLKLIRGNCIESVIQKHFMHRFANSVIEGEVYNVTQFTVARNSGKFRATHHDHKLTFNANTRIVPCLTVAIPGTGLSLVKTSDILKTKGSSQYLVDFMGIVTGISEKLTLRKEGRQTCLMLIDMVDEMGKIRCAIFGQLIDTMKGFLTLSRCGLPVLIIHLARVNLYRGEVGIQNLLNASKLFWNPEIPEAIKFKNSLAVHKIETDVEISLISDNRCPVSMREQFLTMFPRKRVGDLNHMLEDGTYIVLGTITEVFQEDDWWYIACSCMRAVDFSQGFPYCDDCKREVFNMSHRYKVKILVADQSDSSELIMFDSACYSLLNIPCKGLLSDYKARKTDGYPPEILDFIGQEMFFSLELNAEKSSSFDGEAIKVQKICLDACILNEYKELIDDETPLKSPSTPCTGTVDCKLPVQVKDDEPCEKKGGGERLKSSSWKKHDLPEVKLP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00096 469 MobiDBLite consensus disorder prediction 440 469 - -
Sebi27g00096 469 SUPERFAMILY Nucleic acid-binding proteins 99 225 IPR012340 -
Sebi27g00096 469 Pfam Domain of unknown function DUF223 30 109 IPR003871 -
Sebi27g00096 469 SUPERFAMILY Nucleic acid-binding proteins 30 91 IPR012340 -
Sebi27g00096 469 CDD RPA1_DBD_A_like 30 86 - -
Sebi27g00096 469 Gene3D - 93 231 IPR012340 -
Sebi27g00096 469 Gene3D - 15 90 IPR012340 -
Sebi27g00096 469 Pfam Replication factor-A C terminal domain 272 387 IPR013955 -
Sebi27g00096 469 Gene3D - 251 410 IPR012340 -
Sebi27g00096 469 SUPERFAMILY Nucleic acid-binding proteins 265 386 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00096 Sebi-Chr27 1931220 1933787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00096 28 351 Core DNA Replication Machinery Family AT4G19130 21.471 4.72e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00096 - - lja:Lj6g3v0884310.1 294.278