Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00095 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTAGTGAAGAAAAAGTTGCACATCACTGCCAAGTCATTCATGACAGAGGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAGCAATTGCATATGCAGCAGTTGCAGTTAATGCGTCAAGCTCAGCTGCAAAGAAGGGATTCTAATCATACTCCTCTCGGAGGTTCTGTAAATGCTATCACTACAGAAGGAATGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAAGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAGCCACTTCTAGATGCTAGAATGGCCCTTTTGAAACCAACAAATCATCCTGGTCAGATGGTTGCAGGAAACTCAGGAAGTGTGACAGCAGCTCTGCAGCAAATCCAGGCTCGAACTCAGCAGACCCCTCAGGACATCAAAGGTGAAGTCAACATGGGCACTATGCAGAGATCTCTGCCTATGGATCCTTCTTCAGTTTATGGGCATGGAGGAATGCAGTCAAAGCCTGGAATCACAAATGCAGGTTTAAATCCTGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGTCCTGGTTTTGGAGCACAAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAATTTCAGCTTTTGCCACAACAACAACAACAGCAGATTCTTGCACAGGTACAAGCACAAGGAAATATTGGCAATTCGCCAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAAATTTGAATGTGAAAGATGGTCAACAAATTGCGAACGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAGCTGGTGCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACTCGGCCCTTCTAATTCTCAACCGTCAACTCCATCTACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTTCTGGTGTATCTAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGTTGGTCTTGCATCTTCTACAAACCAACTGGATGACATCGAACATTTTGGAGACGTTGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGAATTGTTTGCTGTGAAACGGAACCCCTCTGATCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGACACACTGCAAACAGAGAGCACACCTGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCATTTGATACAACTGTGCGGCTTTGGGACGCTGCAGATCCAAGCTTTTCTTTGCAGGCGTATAGCGGCCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGACTGGACAACTTCTTGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGAAGATGCACACCTTACAGGGACACTCTGCAGAGGTACACTGTGTATGTTGGGATACAAATGGAGAGTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTACCTCTGGGGACTGCATTCATGAACTTAATTCCAGTGGAAATATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTATTGGTTATTGGTGGATACCAGGGTCCCATTGGATATGCTGTCTCTTCTGAAGACCATCTGGATGTAAACTTGAACGCTTGTTGGGGGAATACAACACATTTGCTACTTGGGTCAATAGTAGACTTGATTGATATCAAATACCAAAGATTGAGGCCTCTTGGATCAGGAAGCATGTATCAAGCAGCATTGTCAGACCATTCTGTCTGA 2373 0.4378 MAQSNWEADKMLDVYIYDYLVKKKLHITAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQQLHMQQLQLMRQAQLQRRDSNHTPLGGSVNAITTEGMLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKPTNHPGQMVAGNSGSVTAALQQIQARTQQTPQDIKGEVNMGTMQRSLPMDPSSVYGHGGMQSKPGITNAGLNPGVGGLTLKGWPLTGIDQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQILAQVQAQGNIGNSPVYGDMDPQRLRGLARGNLNVKDGQQIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVSGVSKGLMMYGTEGAVGLASSTNQLDDIEHFGDVESFLSQDDGDGRELFAVKRNPSDHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMDTLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRTGQLLAAASGSVVSLFDVETDRKMHTLQGHSAEVHCVCWDTNGEYLASVSQESVKVWSLTSGDCIHELNSSGNMFHSCVFHPSYSTLLVIGGYQGPIGYAVSSEDHLDVNLNACWGNTTHLLLGSIVDLIDIKYQRLRPLGSGSMYQAALSDHSV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Sebi27g00095 790 MobiDBLite consensus disorder prediction 326 408 - -
Sebi27g00095 790 SUPERFAMILY WD40 repeat-like 489 730 IPR036322 GO:0005515
Sebi27g00095 790 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Sebi27g00095 790 CDD WD40 491 727 - -
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Sebi27g00095 790 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 729 IPR044716 GO:0003714
Sebi27g00095 790 Gene3D - 630 741 IPR015943 GO:0005515
Sebi27g00095 790 MobiDBLite consensus disorder prediction 326 417 - -
Sebi27g00095 790 Pfam LisH 10 36 IPR006594 GO:0005515
Sebi27g00095 790 SMART WD40_4 616 652 IPR001680 GO:0005515
Sebi27g00095 790 SMART WD40_4 530 569 IPR001680 GO:0005515
Sebi27g00095 790 SMART WD40_4 573 613 IPR001680 GO:0005515
Sebi27g00095 790 SMART WD40_4 655 693 IPR001680 GO:0005515
Sebi27g00095 790 SMART WD40_4 488 527 IPR001680 GO:0005515
Sebi27g00095 790 Gene3D - 459 629 IPR015943 GO:0005515
Sebi27g00095 790 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 530 - -
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 702 IPR001680 GO:0005515
Sebi27g00095 790 Pfam WD domain, G-beta repeat 577 613 IPR001680 GO:0005515
Sebi27g00095 790 Pfam WD domain, G-beta repeat 500 527 IPR001680 GO:0005515
Sebi27g00095 790 Pfam WD domain, G-beta repeat 536 569 IPR001680 GO:0005515
Sebi27g00095 790 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Sebi27g00095 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Sebi27g00095 790 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00095 Sebi-Chr27 1896517 1909839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00095 489 694 U-box Gene Family AT2G33340 28.241 7.66e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sebi27g00095 WD40 5.8e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00095 - - gmx:100797756 1289.63