Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00078 ATGGAGCACAATGTATGTCAATCACTTGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTATCAAGTCTTCTCAAAGGAGCGAAAGTACAAACAGTGTGTTGGGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCTTAGTGGCATTTGAGAAGATGGTAAAAAAGTGGCGCTACTTAGAAGTTGAGAAAGAATTCAAAAATAGTCAAAGTGCACCTCCTCGTATTATAAATATTAGTGAGACTCTACGACATGCATCTTTGATATATACTCATAAGATATTTAAACTATTTTTGAATGAATATCTTGAAGGGACAGGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTCAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGCAATCTTGTGA 1452 0.3526 MEHNVCQSLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLINSMVNAGIKSSQRSESTNSVLGEIAGKTTSLTQFLVAFEKMVKKWRYLEVEKEFKNSQSAPPRIINISETLRHASLIYTHKIFKLFLNEYLEGTGGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSAIL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00078 483 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Sebi27g00078 483 Pfam SWIM zinc finger 264 295 IPR007527 GO:0008270
Sebi27g00078 483 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 136 IPR031052 GO:0006355
Sebi27g00078 483 SMART 26again6 275 302 IPR006564 GO:0008270
Sebi27g00078 483 MobiDBLite consensus disorder prediction 427 457 - -
Sebi27g00078 483 Coils Coil 393 413 - -
Sebi27g00078 483 ProSiteProfiles Zinc finger SWIM-type profile. 264 300 IPR007527 GO:0008270
Sebi27g00078 483 MobiDBLite consensus disorder prediction 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00078 Sebi-Chr27 1572129 1574519 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi27g00078 FAR1 1.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00078 - - tpra:123905334 458.759