Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00072 ATGGCAGCAGAAGTGACTGGAGAAGACATTGTGAGGTCAATGAGTGATGGAAGGAGGAGTTTTGGGGAGTGGTCCTCAGCAAGCTTGCATGATGCAGTTGGTGGACAGGGTGATGTGTTTCAAAGAAGTGGAAGGGAAATAGATGAAGAGGAGGAGCTGAAGTGGGAAGCTTTGGGGAGGCTTCCAACATATGATAGGTTGAGGAAAGGGATTCTGAAGCAAGTTCTAGAAAATGGGAGGGTTAACTATGAAGAGATTGACATCACCAAACTTGGAGTGCAGGAAAAGAAGTATATCCTTGAGAGCATACTGAAGACTGCTGAAGAAGATAATGAGAAATTTCTTCATAGGATGAGGGACAGAATAGATAGGGTTGGAATTGAAATTCCCAAGATTGAAGTCAGATTTGAGCATTTATCAGTTGAAGGGGATGCATATATTGGAACTAGGGCCTTACCAACACTACTTAATACTACCCTGAATGTAGTAGAGGGACTTCTTGGATATATCAAGCTTTTGCCATTTAAGAAAAAGGTTGTCAAGATTCTCAAAGATGTCAGTGGAATTGTGAAACCATCAAGAATGACTTTGCTTTTGGGACCTCCAGGATCAGGAAAAACTACACTCCTCCAGGCACTTGCTGGAAAAATGGACAAGGATCTAAGGCATGATCTTCATCATGGAGAAATGACAGTGAGAGAGACACTGGACTTCTCTGGACGCTGCTTGGGAGTTGGAGCAAGGTATGATCTGCTGGCAGAATTGTCAAGAAGAGAACTAGTAGCAGATATCAAACCAGATCCTGAAATTGATGCTTTCATGAAAGCCACAGCAGTGGAAGGTCAAGAAACAAGTCTTGTTACAGATTATATTCTCAAGATTCTTGGATTGGAAATATGTGCTGATATTTTGGTGGGAGATGAAATGAGAAGGGGCATATCTGGTGGACAAAAGAAGCGTTCAACTACTGTTCTAATAAACAGTAACTTATGTAAACTGAATGGTGCAGGTGAGATGTTGGTAGGACCTGCAAAAGCCTTCTTCATGGATGAAATTTCAACTGGTTTGGATAGTTCCACTACCTTCCAAATCATCAGGTTTATGAGACAGATGGTCCATATCATGGATGTTACTATGATAATCTCTCTTCTGCAACCTGCACCAGAAACATATGACCTTTTTGATGACATAATATTACTTTCTGAAGGCTTCAAATGCCCAGAAAGGAAAGGAGTTGCAGACTTTTTACAGGAGGTAACTTCCAGAAAGGACCAAGAACAATACTGGTTCAGAAGGGACATACCTTACCAATATATTAGTGTGCCTGAGTTTGTAGCACACTTCAACAATTACTGCATTGGCCAACAACTTCATGAAGAGATTCAAGTTCCATTTGATTCTAATAAAACTCACCCTGCTGCATTGGTCAAGGAAAAAACAGAAATGAAGCATGGTCAACTTGAAGATGGAGGAAAATATTATGGTGCACTATTTTTCAGTCTCATTAATGTAATGTTCAATGGAGTGGCAGAGCTTGCAATGACTATTAATAGACTTCCTGTTTTCTTCAAGCAAAGAGATTTCTTGTTTTATCCATCATGGGCTTTTGCATTGCCCATCTGGGTCCTTAGATTTCCTCTCTCTCTATTGGAGTCAGGAATATGGATCATCCTCACCTATTATACTATTGGCTTTGCTCCTTCAGCTAGTAGGTTTTTTCGTCAATTATTGGCATTCTTCTGTGTGCATCAAATGGCTCTATCCCTTTTCCGCTTCATTGCTGCAATTGGAAGAACAAAAGTTGTGGCAAACACACTTGGTATCTTCACGATTTTAGTTGTTTTTGTCCTAAGTGGATTTACTATTTCAAGAGATGATATTGAGCCATGGATGATATGGTGCTATTATGCTTCACCTATGATGTATGGACAGACTGCAATAGCCATCAATGAGTTCCTAGACAAAAGATGGAGTGCTCCTAATAATGACCCAAGAATTCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAAGGCCAGAGGCATATTTACAGAAGACTATTGGTACTGGATATCTGTTGGTGCCCTTATAGGATTTTCTCTTCTTTTCAACATTTGTTTCATTCTTGCTCTAACTTATTTAAATCCATTTGTGAGCTCAAAATCTATTATAGTGGAAGAGGAAGACAGTAGGAAAAGCATGACTGCACCTTCCTCAGGGAAAAAACTGGCAACAGCAAATTCAGAGAAGAATTCAGCTTCAAATGCTAAATGGTTTGAAGGTATTGATCTGGAAGTAAGAAACACCACACATAGCCCAATTACAAAAGCTGCAGAGTTTTCAAAGTCCAAGAAGGGAATGGTGTTGCCCTTTCAGCCTCTGTCACTTGCTTTTGAAAATGTGAATTATTACATCGATATGCCAAATGAAATGAAGAAACAAGGAATTGAAGAGAATAGACTCCAACTACTAAAAGATATAAGTGGTGCTTTCAGGCCTGGAGTATTAACAGCATTAGTTGGTGTAAGTGGTGCTGGAAAAACCACCTTGATGGATGTGCTTGCAGGAAGGAAAACTGGTGGTTATATTGAGGGAAGCATCAACATATCCGGTTATCCAAAGAACCAATCAACTTTTGCTCGGATTAGTGGTTATTGTGAACAAAATGATATCCATTCTCCAAATGTTACAGTCTATGAATCCCTTATGTTTTCTGCTTGGTTGCGTCTCAGTAAGGAGGTTGATAAAGAAACACGAAAGATGTTTATTGAGGAAGTTATAGAGCTGGTTGAGCTACATTCAGTGAGGAATTTTATAGTAGGCCTTCCAGGAATAGACGGCTTATCAACTGAACAGAGAAAGAGGCTTACCATCGCTGTAGAGTTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACAACTGGTCTTGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTTAGAAATACAGTAGATACAGGGAGAACTGTTGTCTGCACAATTCATCAACCAAGCATTGATATATTTGAACATTTTGATGAGCTGCTTTTGATGAAGAGAGGTGGACAAGTGATATATGGTGGTCCTCTTGGTCGAAATTCTGAGAAGCTTATAGGGTACTTTGAGGCTATTACAGGAATTCCTGAGATTAAAGATGGATATAATCCAGCCACATGGATGCTGGAGATCACTTCTCCCTTAGTTGAATCTCAGCTTGATATAGACTTTGCTGAATTATACACAAAGTCAGACCTTTACCAAAAGAACCAGGAACTTATTAAGGAACTATGCACACCAGTACCTGGGACAAAGGACCTTTACTTTCCATCTAAATACTCCCAATCCTTTGTTACTCAATGCAAAGCTTGCTTCTGGAAACAGCAAAAGGAACAAGACCTGTTGAATCTCCTTGGAGCTATGTATTTATCTGTTATTTTCCTTGGAGCCTCCAACACTAGCAGTGTGCAACCTGTTGTTGCAATAGAAAGAACAGTTCTCTACCGTGAAAGAGCTGCTGGAATGTACTCAGAACTGCCCTATGCAATTGGTCAGGTAGCAATTGAAGTAATTTATGTTGCAATCCAAAGTCTAGCCTATTCCATTATCCTCTACTGGATGATTGGGTTGCCATCACAAGTTGATAATTTCTTGTGGTTCTACTACTTCATATTCATGTCCTTCATGTACTTCACACTGTATGGAATGATGACTGTAGCTCTGACACCAAACCACCAAATTGCTGCAATTGTTATGTCTTTCTTCATCAGTTTCTGGAACCTGTTCTCTGGTTTTCTTATCCCAAGAACGCAAATTCCAATATGGTGGAGGTGGTACTATTGGGCATCCCCTGTGGCATGGACTATATATGGATTGGTGACATCACAGGTGGGTGACAAGAACAGTCCAATAGAAGTTCCTGGGTTTAAGCCAATGACAATAAAAGAGTACCTTGAGAAACGGTTGGGCTTTCAACATGACTTCCTTGGGGTTGTTGCTTTGACTCACATTGCTTTCAGCCTTCTCTTCCTTTTTGTATTTGCTTATGGCATCAGGTTCCTAAACTTCCAGAAAAGATAA 4083 0.4019 MAAEVTGEDIVRSMSDGRRSFGEWSSASLHDAVGGQGDVFQRSGREIDEEEELKWEALGRLPTYDRLRKGILKQVLENGRVNYEEIDITKLGVQEKKYILESILKTAEEDNEKFLHRMRDRIDRVGIEIPKIEVRFEHLSVEGDAYIGTRALPTLLNTTLNVVEGLLGYIKLLPFKKKVVKILKDVSGIVKPSRMTLLLGPPGSGKTTLLQALAGKMDKDLRHDLHHGEMTVRETLDFSGRCLGVGARYDLLAELSRRELVADIKPDPEIDAFMKATAVEGQETSLVTDYILKILGLEICADILVGDEMRRGISGGQKKRSTTVLINSNLCKLNGAGEMLVGPAKAFFMDEISTGLDSSTTFQIIRFMRQMVHIMDVTMIISLLQPAPETYDLFDDIILLSEGFKCPERKGVADFLQEVTSRKDQEQYWFRRDIPYQYISVPEFVAHFNNYCIGQQLHEEIQVPFDSNKTHPAALVKEKTEMKHGQLEDGGKYYGALFFSLINVMFNGVAELAMTINRLPVFFKQRDFLFYPSWAFALPIWVLRFPLSLLESGIWIILTYYTIGFAPSASRFFRQLLAFFCVHQMALSLFRFIAAIGRTKVVANTLGIFTILVVFVLSGFTISRDDIEPWMIWCYYASPMMYGQTAIAINEFLDKRWSAPNNDPRIPEPTVGKAFLKARGIFTEDYWYWISVGALIGFSLLFNICFILALTYLNPFVSSKSIIVEEEDSRKSMTAPSSGKKLATANSEKNSASNAKWFEGIDLEVRNTTHSPITKAAEFSKSKKGMVLPFQPLSLAFENVNYYIDMPNEMKKQGIEENRLQLLKDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQSTFARISGYCEQNDIHSPNVTVYESLMFSAWLRLSKEVDKETRKMFIEEVIELVELHSVRNFIVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEHFDELLLMKRGGQVIYGGPLGRNSEKLIGYFEAITGIPEIKDGYNPATWMLEITSPLVESQLDIDFAELYTKSDLYQKNQELIKELCTPVPGTKDLYFPSKYSQSFVTQCKACFWKQQKEQDLLNLLGAMYLSVIFLGASNTSSVQPVVAIERTVLYRERAAGMYSELPYAIGQVAIEVIYVAIQSLAYSIILYWMIGLPSQVDNFLWFYYFIFMSFMYFTLYGMMTVALTPNHQIAAIVMSFFISFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKNSPIEVPGFKPMTIKEYLEKRLGFQHDFLGVVALTHIAFSLLFLFVFAYGIRFLNFQKR 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00072 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 403 IPR027417 -
Sebi27g00072 1360 CDD ABCG_PDR_domain2 792 1030 IPR034003 -
Sebi27g00072 1360 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 223 479 - -
Sebi27g00072 1360 SMART AAA_5 832 1024 IPR003593 GO:0016887
Sebi27g00072 1360 SMART AAA_5 192 404 IPR003593 GO:0016887
Sebi27g00072 1360 FunFam ABC transporter G family member 40 809 1039 - -
Sebi27g00072 1360 Pfam Plant PDR ABC transporter associated 657 723 IPR013581 -
Sebi27g00072 1360 Pfam ABC-transporter N-terminal 107 157 IPR029481 -
Sebi27g00072 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1031 IPR027417 -
Sebi27g00072 1360 Gene3D - 804 1040 IPR027417 -
Sebi27g00072 1360 Pfam ABC transporter 183 320 IPR003439 GO:0005524
Sebi27g00072 1360 FunFam ABC transporter G family member 34 221 442 - -
Sebi27g00072 1360 Gene3D - 170 425 IPR027417 -
Sebi27g00072 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 427 IPR003439 GO:0005524
Sebi27g00072 1360 Pfam ABC transporter 823 974 IPR003439 GO:0005524
Sebi27g00072 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 795 1047 IPR003439 GO:0005524
Sebi27g00072 1360 Pfam ABC-2 type transporter 492 652 IPR013525 GO:0016020|GO:0140359
Sebi27g00072 1360 Pfam ABC-2 type transporter 1124 1296 IPR013525 GO:0016020|GO:0140359
Sebi27g00072 1360 Pfam ABC-2 type transporter 1004 1074 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00072 Sebi-Chr27 1372549 1381584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00072 820 1007 Calmodulin-binding Proteins AT2G36910 27.228 2.63e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00072 K08711 - gmx:100788067 2248.4