LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi27g00065	ATGTATTGCAATTTTAAGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTAGAATATTTAAGGGCCCATTTGAAGTATGAGAAGAATCCCAAGATCAAGGAGGCAATAACTCAGAAATTTGCTCAATACTTGAGGAGGGCCGAGGAGATTAGCGCCATTCTTGATGCAGGAGGTAGTAAACCAAACTTGAATAGAGAAGCAGCAGCTTCTGTAAGACCAAAGACAAAGACAAATAGTGGAGTAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGCTGAGGGCTGGTCTTGATTCTGTTATAATCAAAGAGAAACCAAATGTCAGATGGAGTGACATTGCTGGCCTTGAGAATGCCAAACAGGCATTACAAGAGGCTGTAATATTGCCTGTTAAGTTCCCACAATTTTTCACTGGTAAAAGACAACCATGGAGAGCATTTTTATTGTATGGTCCACCTGGAACAGGGAAATCATACTTAGCAAAGGCAGTAGCAACAGAAGCAGACTCTACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTCCAAATGGCTCGTGATAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAACTGAAGCATCTAGAAGAATCAAAACTGAACTTCTAGTGCAAATGCAGGGTGTGGGACATAATGATCAGAAAGTTCTCCTTCTTGCAGCCACAAATACTCCTTATGCTCTGGATCAGGCCATTCGACGACGCTTTGACAAAAGGATATACATCCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAACCTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGTAAAACACGAGATGCTAAATTCTTCAGGAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTAAACGAGGAGCTGTTAATATTAGCCTGGAGGAACTTGATGCACAAGGCCTTGCTTCAAAGATTCTTCCACCACCCATCACCAGAGCAGATTTTGATAAAGTATTGGCCAGACAAAAGCCAACTGTTAGTAAAGCTGATCTTGAGGTGCATGAGAGATTCACCCAAGAGTTTGGAGAGGAGGGATGA	1302	0.4063	MYCNFKEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLRAHLKYEKNPKIKEAITQKFAQYLRRAEEISAILDAGGSKPNLNREAAASVRPKTKTNSGVEKDKEDPEQAKLRAGLDSVIIKEKPNVRWSDIAGLENAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQRGEGNETEASRRIKTELLVQMQGVGHNDQKVLLLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDISVCVKDVLFEPVRKTRDAKFFRKTSKGMWVPCEPTKRGAVNISLEELDAQGLASKILPPPITRADFDKVLARQKPTVSKADLEVHERFTQEFGEEG	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi27g00065	433	SMART	AAA_5	162	298	IPR003593	GO:0016887
	Sebi27g00065	433	Pfam	MIT (microtubule interacting and transport) domain	8	70	IPR007330	-
	Sebi27g00065	433	SMART	smart	2	80	IPR007330	-
	Sebi27g00065	433	FunFam	Vacuolar protein sorting-associated protein 4	125	305	-	-
	Sebi27g00065	433	Pfam	ATPase family associated with various cellular activities (AAA)	167	296	IPR003959	GO:0005524\|GO:0016887
	Sebi27g00065	433	SUPERFAMILY	MIT domain	4	83	IPR036181	-
	Sebi27g00065	433	MobiDBLite	consensus disorder prediction	83	109	-	-
	Sebi27g00065	433	Gene3D	-	6	75	-	-
	Sebi27g00065	433	Gene3D	-	298	413	-	-
	Sebi27g00065	433	FunFam	Suppressor of K+ transport growth defect 1	6	75	-	-
	Sebi27g00065	433	CDD	RecA-like_VPS4	124	294	-	-
	Sebi27g00065	433	PANTHER	AAA DOMAIN-CONTAINING	23	431	-	-
	Sebi27g00065	433	Pfam	Vps4 C terminal oligomerisation domain	366	430	IPR015415	-
	Sebi27g00065	433	ProSitePatterns	AAA-protein family signature.	268	287	IPR003960	GO:0005524\|GO:0016887
	Sebi27g00065	433	FunFam	vacuolar protein sorting-associated protein 4A	298	413	-	-
	Sebi27g00065	433	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	125	428	IPR027417	-
	Sebi27g00065	433	Gene3D	-	125	421	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi27g00065	Sebi-Chr27	1251352	1257258	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi27g00065	161	354	Calmodulin-binding Proteins	AT3G56690	36.735	1.82e-35	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi27g00065	K12196		-	csav:115706151	745.732