Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00028 ATGGAATCTAAACATGAAATTGTTGAGATTTCAAGTGACTCATGTGAGGATGCTGATGTCCATGAAGAATGGGTTGTGGATCTATCTGAAGCTCAAACATCTGGAGGTCAAGCTTTGGGAGTTCCAGCAAGCATCAGGCGAGGTTGGTTTGGCCATGGACCAACAGAAATCTTGGTTTGCATTGAAGGAAAAGAGCCGCCCCAGACATGGGAGTTACTGTGGTACAATCAAGGAAAGCAATGCCTTATAGGAAAGGGATGGTATGCATTTTGTCGGGATAATGCCCTGTCTGCAGGTAATATTGTGACTTTTGTTAAATGCAGAGGTGTGGAAGAATTGTTGGTAGTGCTTGATCGTTTAGATGGTTGA 369 0.4363 MESKHEIVEISSDSCEDADVHEEWVVDLSEAQTSGGQALGVPASIRRGWFGHGPTEILVCIEGKEPPQTWELLWYNQGKQCLIGKGWYAFCRDNALSAGNIVTFVKCRGVEELLVVLDRLDG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00028 122 Gene3D - 5 118 IPR015300 -
Sebi27g00028 122 ProSiteProfiles B3 DNA-binding domain profile. 68 121 IPR003340 GO:0003677
Sebi27g00028 122 Pfam B3 DNA binding domain 56 109 IPR003340 GO:0003677
Sebi27g00028 122 SUPERFAMILY DNA-binding pseudobarrel domain 37 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00028 Sebi-Chr27 595877 596525 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi27g00028 B3 1.6e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00028 - K07141 lja:Lj6g3v0497350.1 67.781