Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00025 ATGGATCCAAATAGCGGTTTCAGCATTTGCTTGCCTTGCCAAATTTCTGATATCATTACTTTTGTTGGAAGAGTAGCGCCGTATGCCTTTGGTCCTATTAGACAAGAAGTGGTTTATTTGATATCCTACGAAGGTAATATCAAGGAGTTAGCAGATCTAGTGAAGGACCTTGAAGATAAAAGAGAAGAAATAAACAATTTGGTTGAAGCTGAAAGAAGGAGTGGGAAAAAAATTGAATCTGGTGTGCAGAGCTGGTTTGAGAAGGTTAATGAGGTCATTGAAAAGGCAAATCAGCTAAGGGAAGATTCTCACCGTGCAGAGGTTGGGTGTTCAGGATGGTTGTTCCCCAATTTGATTTCCCGACATCGGTTTAGCAAGAAAGCTACTGTGATAGCAAAAGATGTTGTTCAAGTACAAGAAAAAGGGAATTTCGAAAGAGTTGGTTACCTTCCTCCTCTAGATGAAGCAGCCTCTTCTTCGGGCACTAAAGATGCTGAAAAGCTGCTTGAGACAAGAGAGACATTTAAAGAGAAGATTGTGAAGGCTCTAAAAGACCCTAAAGCACGCAACATTGGGGTCTACGGGCTTGGCGGTGTGGGTAAGACCACTCTAGTGAAGGAAGTTGCTCAAATAGCCAAGCAAGAGAAATTGTTCGATGCAGTGGTTAGGGCCGATGTATCCAAAACTCCTGACATTAGGACAATTCAAGGGGAGATTGCGGATCTATTGGGTCTGCGATTTGATGAAGAGACCGTTGCTGGTAGAGCAAACCGGCTAAGGCAGAGAATCAGAGCAGAGAAAACTATCCTTGTGATTCTAGATGATATCTGGACCAGACTTGATTTGGAGAAAGTAGGAATTCCATCTGGAAAAGACCATGATGGTTGCAAATTACTCATGACTTCCAGAAACAAAGAGGTGCTGCTGGAAATGGACACTCTCAAGGATTTCACTTTCAGGCTTGAACTTTTGAGTGAAGCAGAAACATGGCGCTTATTTCAATTTATGGCTGGGGATGTGGTTAATGATCATGATACCAATTTAAAAGATGTAGCAAAACAAGTGGCCCAAAAATGTGGAGGTTTGCCTCTTCACCCAGTGACGGTTGCTCGAGCATTGAAAGGTAGAGATATTTATTCTTGGAAAGATGCATTAAGGAAATTACAAAGTGTTGATCATGATCATGAGGAGGTGATTGCAACAACTTCTTCTGATCTGAAGTTGTGTTACGACCGATTGGAGAGCGATGAAACGAAGCAACTCTTCTTGCTTTCTGCTACACTAAAAGGTGAAACTGTGGAGTACTTATTGAAAGTTGCAATGGGTTTGGGAATATTCAAGGGTATAAATACCTTGGAAGATGCAAGAAACAGACTTCACAGCATAATCGGATCCTTGAAGGCATCTTGTCTGTTCCTTGAGGGTAACACAAATAGGCGGATCCAAATGCATGACATTGTTCATGACGTAGCCATCTCCATTGCATCTGAGGATCAGCATGTATTTGTGAAAAGGGGGGATGACTTAGAGGAATGGCCAACAAAATTAGATTTTCTGGAAAGTTGCCAACATATCATCTTATATGGGTGTCATATCCATGAACTTCCTCAGAGGTTAGATTGTCCTAACATTAAGTTTTTCTGCTTGTACAGTGCTAATCGTTCTTTAGAAATCCCAGATACAATTTTTGAGGGAATGGGCAGCCTCAAAGTGTTAGATTTAACAAACCTGCACTTGTCTTCATTACCCACTTCTTTTCGATACCTAACTGACCTTCAAACATTGTGCTTTGCTCATTGTGTTTTGGAAAATGTGGATGGAATAGGAGCTTTGAAAAATTTAGAAATTCTTAGTCTATCGAACACTTCGATTATCAAGTTGCCAAGCGAAATAAGGAAATTGACTAATCTAAGATTGCTTGATTTGAGCAGCTCTAGAATTGAAGTCATCCCTCCTAACATCATATCAAGCTTGACTAAATTGGAGGAGTTGTACTTGGGTAATACCTCCGTTAAGTGGGAAGGTGAGAATTCAGCTAACCAAAGTGAAAATGCAAGTCTTTCTGAGCTTGGACAATTGCCTAACTTGACAGCTCTAGAATTACAAATTCGTGAGGCTTGGATTTTGCCAAGGGACTTAAAAGTGATGTTTGAGAAGCTAAAAAGATTTAAAATATTCATAGGAGATGCCTGGGTATGGTCTTACATTGGAGATCAAACCTTGAAAACATTGAAGCTCAAACTTGGTACCGACAGACATTTGGAGCACAAGAGTAAAACATTGATTAAAGCATTGATTAAAAAGGCCGAGAATTTGTACTTGGATGAAGTAGATGGTATTCAGAATGTTCTTAATCAACTGAATTTGGAAGGATTTCCATTGTTGAAGCACCTCCACATCCAAAATAATGCAAACATGAAACACATCGTTGACTCTATGGAGAGGAATCAAGTCAAGGTTTCCTTTCTCAACTTGGAAACACTAGTACTTGTCAATCTTCCAAACTTGGAGGAGATATGTCATGGCACACTTGCAGTTAATTCCTTCAGCAAGCTTAGAGTCATCAAAGTCCAAAATTGTAACCAATTAAAGTATCTTCTCTCAGTTTTAATGGTGAAAGGACTTTCCCAACTTTCAGAGATCCAAGTTTCTCGATGCAATTCTATGGAGACAATAGTCCTTGGAGATGGCAGTTGA 2697 0.4004 MDPNSGFSICLPCQISDIITFVGRVAPYAFGPIRQEVVYLISYEGNIKELADLVKDLEDKREEINNLVEAERRSGKKIESGVQSWFEKVNEVIEKANQLREDSHRAEVGCSGWLFPNLISRHRFSKKATVIAKDVVQVQEKGNFERVGYLPPLDEAASSSGTKDAEKLLETRETFKEKIVKALKDPKARNIGVYGLGGVGKTTLVKEVAQIAKQEKLFDAVVRADVSKTPDIRTIQGEIADLLGLRFDEETVAGRANRLRQRIRAEKTILVILDDIWTRLDLEKVGIPSGKDHDGCKLLMTSRNKEVLLEMDTLKDFTFRLELLSEAETWRLFQFMAGDVVNDHDTNLKDVAKQVAQKCGGLPLHPVTVARALKGRDIYSWKDALRKLQSVDHDHEEVIATTSSDLKLCYDRLESDETKQLFLLSATLKGETVEYLLKVAMGLGIFKGINTLEDARNRLHSIIGSLKASCLFLEGNTNRRIQMHDIVHDVAISIASEDQHVFVKRGDDLEEWPTKLDFLESCQHIILYGCHIHELPQRLDCPNIKFFCLYSANRSLEIPDTIFEGMGSLKVLDLTNLHLSSLPTSFRYLTDLQTLCFAHCVLENVDGIGALKNLEILSLSNTSIIKLPSEIRKLTNLRLLDLSSSRIEVIPPNIISSLTKLEELYLGNTSVKWEGENSANQSENASLSELGQLPNLTALELQIREAWILPRDLKVMFEKLKRFKIFIGDAWVWSYIGDQTLKTLKLKLGTDRHLEHKSKTLIKALIKKAENLYLDEVDGIQNVLNQLNLEGFPLLKHLHIQNNANMKHIVDSMERNQVKVSFLNLETLVLVNLPNLEEICHGTLAVNSFSKLRVIKVQNCNQLKYLLSVLMVKGLSQLSEIQVSRCNSMETIVLGDGS 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00025 898 PRINTS Disease resistance protein signature 263 277 - -
Sebi27g00025 898 PRINTS Disease resistance protein signature 359 373 - -
Sebi27g00025 898 PRINTS Disease resistance protein signature 190 205 - -
Sebi27g00025 898 PRINTS Disease resistance protein signature 632 648 - -
Sebi27g00025 898 Coils Coil 40 74 - -
Sebi27g00025 898 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 48 893 - -
Sebi27g00025 898 Gene3D Ribonuclease Inhibitor 497 895 IPR032675 -
Sebi27g00025 898 Gene3D - 153 316 IPR027417 -
Sebi27g00025 898 Gene3D - 323 414 IPR042197 -
Sebi27g00025 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 423 IPR027417 -
Sebi27g00025 898 SMART LRR_typ_2 611 633 IPR003591 -
Sebi27g00025 898 SMART LRR_typ_2 566 588 IPR003591 -
Sebi27g00025 898 SMART LRR_typ_2 634 657 IPR003591 -
Sebi27g00025 898 SUPERFAMILY L domain-like 482 888 - -
Sebi27g00025 898 Pfam Leucine rich repeat 613 669 IPR001611 GO:0005515
Sebi27g00025 898 FunFam Probable disease resistance protein At1g61300 154 316 - -
Sebi27g00025 898 Coils Coil 82 102 - -
Sebi27g00025 898 Coils Coil 165 185 - -
Sebi27g00025 898 SMART AAA_5 187 327 IPR003593 GO:0016887
Sebi27g00025 898 Pfam NB-ARC domain 173 401 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00025 Sebi-Chr27 503798 506559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00025 189 654 WRKY Transcription Factor Family AT5G45050 24.953 1.46e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00025 - - vvo:131628728 1074.69