Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi27g00022 ATGAAGTCAAAAGCTGGCCTTACGATTTTCCTCAATCAGAAGATTACTTTCCACCCAATCAATGTCAATGCCTTACTATACCAACATTTTAGTATAAAAGTAGCTGATGTTCCTTCATTTCCCTGCTTCACCAGACACATCAAAGGAGGGAGATTTCAATATCCTAACAATGCTTATATTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGGGTATCAATTCTGGACTCGAGCTGACACAAAGGGAAACTCTGTAATAAATAACATTGTGCCAGGGGATTATAATTTGTATGCTTGGGTCCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGAGGAGTCATCAAATTGGATTCACTTATATGTACATATACAATGGGTTGA 420 0.3952 MKSKAGLTIFLNQKITFHPINVNALLYQHFSIKVADVPSFPCFTRHIKGGRFQYPNNAYIGLALPGEAGSWQKESKGYQFWTRADTKGNSVINNIVPGDYNLYAWVPGFIGDYRYNATITITPGGVIKLDSLICTYTMG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi27g00022 139 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 55 133 - -
Sebi27g00022 139 Gene3D - 50 131 - -
Sebi27g00022 139 Pfam Polysaccharide lyase family 4, domain II 56 128 IPR029413 -
Sebi27g00022 139 SUPERFAMILY Starch-binding domain-like 76 130 IPR013784 GO:0030246
Sebi27g00022 139 CDD RGL4_M 42 132 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi27g00022 Sebi-Chr27 477148 477758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi27g00022 42 133 Polysaccharide Lyase AT4G37950 56.522 2.41e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi27g00022 K18195 - gmx:100776664 161.384